Gene : Bradi5g04790 B. distachyon v3.1
Defline:  (1 of 1) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  539
Name:  ? Bradi5g04790 Secondary Identifier:  ? PAC:32810030
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6829 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g04790 0.5kb upstream 0.5kb upstream 4262 true Bd5: 6165202-6169463 Brachypodium distachyon
Bradi5g04790 0.5kb upstream 0.5kb upstream 500 false Bd5: 6165202-6165701 Brachypodium distachyon
Bradi5g04790 0.5kb downstream 0.5kb downstream 4262 true Bd5: 6165702-6169963 Brachypodium distachyon
Bradi5g04790 0.5kb downstream 0.5kb downstream 500 false Bd5: 6169464-6169963 Brachypodium distachyon
Bradi5g04790 1.0kb upstream 1.0kb upstream 4762 true Bd5: 6164702-6169463 Brachypodium distachyon
Bradi5g04790 1.0kb upstream 1.0kb upstream 1000 false Bd5: 6164702-6165701 Brachypodium distachyon
Bradi5g04790 1.0kb downstream 1.0kb downstream 4762 true Bd5: 6165702-6170463 Brachypodium distachyon
Bradi5g04790 1.0kb downstream 1.0kb downstream 1000 false Bd5: 6169464-6170463 Brachypodium distachyon
Bradi5g04790 2.0kb upstream 2.0kb upstream 5762 true Bd5: 6163702-6169463 Brachypodium distachyon
Bradi5g04790 2.0kb upstream 2.0kb upstream 2000 false Bd5: 6163702-6165701 Brachypodium distachyon
Bradi5g04790 2.0kb downstream 2.0kb downstream 5762 true Bd5: 6165702-6171463 Brachypodium distachyon
Bradi5g04790 2.0kb downstream 2.0kb downstream 2000 false Bd5: 6169464-6171463 Brachypodium distachyon
Bradi5g04790 5.0kb upstream 5.0kb upstream 8762 true Bd5: 6160702-6169463 Brachypodium distachyon
Bradi5g04790 5.0kb upstream 5.0kb upstream 5000 false Bd5: 6160702-6165701 Brachypodium distachyon
Bradi5g04790 5.0kb downstream 5.0kb downstream 8762 true Bd5: 6165702-6174463 Brachypodium distachyon
Bradi5g04790 5.0kb downstream 5.0kb downstream 5000 false Bd5: 6169464-6174463 Brachypodium distachyon
Bradi5g04790 10.0kb upstream 10.0kb upstream 13762 true Bd5: 6155702-6169463 Brachypodium distachyon
Bradi5g04790 10.0kb upstream 10.0kb upstream 10000 false Bd5: 6155702-6165701 Brachypodium distachyon
Bradi5g04790 10.0kb downstream 10.0kb downstream 13762 true Bd5: 6165702-6179463 Brachypodium distachyon
Bradi5g04790 10.0kb downstream 10.0kb downstream 10000 false Bd5: 6169464-6179463 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583241 5269 Grass View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.64        
cufflinks 1.074        
cufflinks 1.036        
cufflinks 1.25       High
cufflinks 0.32       Low
cufflinks 0.785        
cufflinks 0.95        
cufflinks 0.669        
cufflinks 0.689        
cufflinks 0.545        
cufflinks 0.412        
cufflinks 0.522        
cufflinks 0.227       Low
cufflinks 0.394        
cufflinks 0.498        
cufflinks 0.785        
cufflinks 0.667        
cufflinks 1.264       High
cufflinks 0.821        
cufflinks 0.127     Low Low
cufflinks 0.989        
cufflinks 0.607        
cufflinks 0.609        
cufflinks 0.684        
cufflinks 0.907        
cufflinks 0.707        
cufflinks 0.518        
cufflinks 0.876        
cufflinks 0.603        
cufflinks 0.864        

0 Strain