Gene : Bradi5g08810 B. distachyon v3.1
Defline:  (1 of 1) PTHR12415//PTHR12415:SF2 - TYROSYL-DNA PHOSPHODIESTERASE 1 // SUBFAMILY NOT NAMED Genomic Order:  862
Name:  ? Bradi5g08810 Secondary Identifier:  ? PAC:32811629
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g08810 0.5kb upstream 0.5kb upstream 6469 true Bd5: 11978791-11985259 Brachypodium distachyon
Bradi5g08810 0.5kb upstream 0.5kb upstream 500 false Bd5: 11978791-11979290 Brachypodium distachyon
Bradi5g08810 0.5kb downstream 0.5kb downstream 6469 true Bd5: 11979291-11985759 Brachypodium distachyon
Bradi5g08810 0.5kb downstream 0.5kb downstream 500 false Bd5: 11985260-11985759 Brachypodium distachyon
Bradi5g08810 1.0kb upstream 1.0kb upstream 6969 true Bd5: 11978291-11985259 Brachypodium distachyon
Bradi5g08810 1.0kb upstream 1.0kb upstream 1000 false Bd5: 11978291-11979290 Brachypodium distachyon
Bradi5g08810 1.0kb downstream 1.0kb downstream 6969 true Bd5: 11979291-11986259 Brachypodium distachyon
Bradi5g08810 1.0kb downstream 1.0kb downstream 1000 false Bd5: 11985260-11986259 Brachypodium distachyon
Bradi5g08810 2.0kb upstream 2.0kb upstream 7969 true Bd5: 11977291-11985259 Brachypodium distachyon
Bradi5g08810 2.0kb upstream 2.0kb upstream 2000 false Bd5: 11977291-11979290 Brachypodium distachyon
Bradi5g08810 2.0kb downstream 2.0kb downstream 7969 true Bd5: 11979291-11987259 Brachypodium distachyon
Bradi5g08810 2.0kb downstream 2.0kb downstream 2000 false Bd5: 11985260-11987259 Brachypodium distachyon
Bradi5g08810 5.0kb upstream 5.0kb upstream 10969 true Bd5: 11974291-11985259 Brachypodium distachyon
Bradi5g08810 5.0kb upstream 5.0kb upstream 5000 false Bd5: 11974291-11979290 Brachypodium distachyon
Bradi5g08810 5.0kb downstream 5.0kb downstream 10969 true Bd5: 11979291-11990259 Brachypodium distachyon
Bradi5g08810 5.0kb downstream 5.0kb downstream 5000 false Bd5: 11985260-11990259 Brachypodium distachyon
Bradi5g08810 10.0kb upstream 10.0kb upstream 15969 true Bd5: 11969291-11985259 Brachypodium distachyon
Bradi5g08810 10.0kb upstream 10.0kb upstream 10000 false Bd5: 11969291-11979290 Brachypodium distachyon
Bradi5g08810 10.0kb downstream 10.0kb downstream 15969 true Bd5: 11979291-11995259 Brachypodium distachyon
Bradi5g08810 10.0kb downstream 10.0kb downstream 10000 false Bd5: 11985260-11995259 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586619 5269 Grass View MSA
122047729 5273 Angiosperm View MSA
121349694 5274 Embryophyte View MSA
123381403 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.261        
cufflinks 0.561        
cufflinks 0.471        
cufflinks 0.436        
cufflinks 0.069     Low Low
cufflinks 0.59       High
cufflinks 0.429        
cufflinks 0.492        
cufflinks 0.557        
cufflinks 0.209        
cufflinks 0.249        
cufflinks 0.512        
cufflinks 0.175        
cufflinks 0.16        
cufflinks 0.17        
cufflinks 0.654       High
cufflinks 0.288        
cufflinks 0.961       High
cufflinks 0.112     Low  
cufflinks 0.019     Low Low
cufflinks 0.168        
cufflinks 0.487        
cufflinks 0.352        
cufflinks 0.358        
cufflinks 0.349        
cufflinks 0.321        
cufflinks 0.153        
cufflinks 0.294        
cufflinks 0.31        
cufflinks 0.422        

0 Strain