Gene : Bradi5g06647 B. distachyon v3.1
Defline:  (1 of 1) PF13414//PF13844 - TPR repeat (TPR_11) // Glycosyl transferase family 41 (Glyco_transf_41) Genomic Order:  644
Name:  ? Bradi5g06647 Secondary Identifier:  ? PAC:32808660
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7437 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g06647 0.5kb upstream 0.5kb upstream 18668 true Bd5: 8802814-8821481 Brachypodium distachyon
Bradi5g06647 0.5kb upstream 0.5kb upstream 500 false Bd5: 8802814-8803313 Brachypodium distachyon
Bradi5g06647 0.5kb downstream 0.5kb downstream 18668 true Bd5: 8803314-8821981 Brachypodium distachyon
Bradi5g06647 0.5kb downstream 0.5kb downstream 500 false Bd5: 8821482-8821981 Brachypodium distachyon
Bradi5g06647 1.0kb upstream 1.0kb upstream 19168 true Bd5: 8802314-8821481 Brachypodium distachyon
Bradi5g06647 1.0kb upstream 1.0kb upstream 1000 false Bd5: 8802314-8803313 Brachypodium distachyon
Bradi5g06647 1.0kb downstream 1.0kb downstream 19168 true Bd5: 8803314-8822481 Brachypodium distachyon
Bradi5g06647 1.0kb downstream 1.0kb downstream 1000 false Bd5: 8821482-8822481 Brachypodium distachyon
Bradi5g06647 2.0kb upstream 2.0kb upstream 20168 true Bd5: 8801314-8821481 Brachypodium distachyon
Bradi5g06647 2.0kb upstream 2.0kb upstream 2000 false Bd5: 8801314-8803313 Brachypodium distachyon
Bradi5g06647 2.0kb downstream 2.0kb downstream 20168 true Bd5: 8803314-8823481 Brachypodium distachyon
Bradi5g06647 2.0kb downstream 2.0kb downstream 2000 false Bd5: 8821482-8823481 Brachypodium distachyon
Bradi5g06647 5.0kb upstream 5.0kb upstream 23168 true Bd5: 8798314-8821481 Brachypodium distachyon
Bradi5g06647 5.0kb upstream 5.0kb upstream 5000 false Bd5: 8798314-8803313 Brachypodium distachyon
Bradi5g06647 5.0kb downstream 5.0kb downstream 23168 true Bd5: 8803314-8826481 Brachypodium distachyon
Bradi5g06647 5.0kb downstream 5.0kb downstream 5000 false Bd5: 8821482-8826481 Brachypodium distachyon
Bradi5g06647 10.0kb upstream 10.0kb upstream 28168 true Bd5: 8793314-8821481 Brachypodium distachyon
Bradi5g06647 10.0kb upstream 10.0kb upstream 10000 false Bd5: 8793314-8803313 Brachypodium distachyon
Bradi5g06647 10.0kb downstream 10.0kb downstream 28168 true Bd5: 8803314-8831481 Brachypodium distachyon
Bradi5g06647 10.0kb downstream 10.0kb downstream 10000 false Bd5: 8821482-8831481 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589128 5269 Grass View MSA
122047286 5273 Angiosperm View MSA
121344424 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.874        
cufflinks 1.011        
cufflinks 1.141       High
cufflinks 0.924        
cufflinks 0.562       Low
cufflinks 0.697        
cufflinks 0.637        
cufflinks 0.855        
cufflinks 0.829        
cufflinks 0.764        
cufflinks 0.864        
cufflinks 0.733        
cufflinks 0.631        
cufflinks 0.608        
cufflinks 0.763        
cufflinks 0.769        
cufflinks 0.513       Low
cufflinks 1.322       High
cufflinks 1.009        
cufflinks 0.538       Low
cufflinks 0.802        
cufflinks 1.257       High
cufflinks 0.917        
cufflinks 0.727        
cufflinks 0.605        
cufflinks 1.03        
cufflinks 0.956        
cufflinks 1.112        
cufflinks 1.09        
cufflinks 0.866        

0 Strain