Gene : Bradi5g13380 B. distachyon v3.1
Defline:  (1 of 1) PTHR10774//PTHR10774:SF94 - EXTENDED SYNAPTOTAGMIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1471
Name:  ? Bradi5g13380 Secondary Identifier:  ? PAC:32809853
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g13380 0.5kb upstream 0.5kb upstream 6049 true Bd5: 17109338-17115386 Brachypodium distachyon
Bradi5g13380 0.5kb upstream 0.5kb upstream 500 false Bd5: 17109338-17109837 Brachypodium distachyon
Bradi5g13380 0.5kb downstream 0.5kb downstream 6049 true Bd5: 17109838-17115886 Brachypodium distachyon
Bradi5g13380 0.5kb downstream 0.5kb downstream 500 false Bd5: 17115387-17115886 Brachypodium distachyon
Bradi5g13380 1.0kb upstream 1.0kb upstream 6549 true Bd5: 17108838-17115386 Brachypodium distachyon
Bradi5g13380 1.0kb upstream 1.0kb upstream 1000 false Bd5: 17108838-17109837 Brachypodium distachyon
Bradi5g13380 1.0kb downstream 1.0kb downstream 6549 true Bd5: 17109838-17116386 Brachypodium distachyon
Bradi5g13380 1.0kb downstream 1.0kb downstream 1000 false Bd5: 17115387-17116386 Brachypodium distachyon
Bradi5g13380 2.0kb upstream 2.0kb upstream 7549 true Bd5: 17107838-17115386 Brachypodium distachyon
Bradi5g13380 2.0kb upstream 2.0kb upstream 2000 false Bd5: 17107838-17109837 Brachypodium distachyon
Bradi5g13380 2.0kb downstream 2.0kb downstream 7549 true Bd5: 17109838-17117386 Brachypodium distachyon
Bradi5g13380 2.0kb downstream 2.0kb downstream 2000 false Bd5: 17115387-17117386 Brachypodium distachyon
Bradi5g13380 5.0kb upstream 5.0kb upstream 10549 true Bd5: 17104838-17115386 Brachypodium distachyon
Bradi5g13380 5.0kb upstream 5.0kb upstream 5000 false Bd5: 17104838-17109837 Brachypodium distachyon
Bradi5g13380 5.0kb downstream 5.0kb downstream 10549 true Bd5: 17109838-17120386 Brachypodium distachyon
Bradi5g13380 5.0kb downstream 5.0kb downstream 5000 false Bd5: 17115387-17120386 Brachypodium distachyon
Bradi5g13380 10.0kb upstream 10.0kb upstream 15549 true Bd5: 17099838-17115386 Brachypodium distachyon
Bradi5g13380 10.0kb upstream 10.0kb upstream 10000 false Bd5: 17099838-17109837 Brachypodium distachyon
Bradi5g13380 10.0kb downstream 10.0kb downstream 15549 true Bd5: 17109838-17125386 Brachypodium distachyon
Bradi5g13380 10.0kb downstream 10.0kb downstream 10000 false Bd5: 17115387-17125386 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124582170 5269 Grass View MSA
122048530 5273 Angiosperm View MSA
121350183 5274 Embryophyte View MSA
123381609 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.087        
cufflinks 0.097        
cufflinks 0.066     Low  
cufflinks 0.06     Low  
cufflinks 0.764       High
cufflinks 0.093        
cufflinks 0.093        
cufflinks 0.08     Low  
cufflinks 0.121        
cufflinks 0.134        
cufflinks 0.097        
cufflinks 0.074     Low  
cufflinks 0.045     Low Low
cufflinks 0.148        
cufflinks 0.06     Low  
cufflinks 0.069     Low  
cufflinks 0.073     Low  
cufflinks 0.163        
cufflinks 0.849       High
cufflinks 2.215       High
cufflinks 0.073     Low  
cufflinks 0.104     Low  
cufflinks 0.147        
cufflinks 0.11        
cufflinks 0.105        
cufflinks 0.069     Low  
cufflinks 0.039     Low Low
cufflinks 0.097     Low  
cufflinks 0.124        
cufflinks 0.159        

0 Strain