Gene : Bradi1g33310 B. distachyon v3.1
Defline:  (1 of 3) K12483 - EH domain-containing protein 1 (EHD1) Genomic Order:  4241
Name:  ? Bradi1g33310 Secondary Identifier:  ? PAC:32795750
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g33310 0.5kb upstream 0.5kb upstream 6636 true Bd1: 28976154-28982789 Brachypodium distachyon
Bradi1g33310 0.5kb upstream 0.5kb upstream 500 false Bd1: 28976154-28976653 Brachypodium distachyon
Bradi1g33310 0.5kb downstream 0.5kb downstream 6636 true Bd1: 28976654-28983289 Brachypodium distachyon
Bradi1g33310 0.5kb downstream 0.5kb downstream 500 false Bd1: 28982790-28983289 Brachypodium distachyon
Bradi1g33310 1.0kb upstream 1.0kb upstream 7136 true Bd1: 28975654-28982789 Brachypodium distachyon
Bradi1g33310 1.0kb upstream 1.0kb upstream 1000 false Bd1: 28975654-28976653 Brachypodium distachyon
Bradi1g33310 1.0kb downstream 1.0kb downstream 7136 true Bd1: 28976654-28983789 Brachypodium distachyon
Bradi1g33310 1.0kb downstream 1.0kb downstream 1000 false Bd1: 28982790-28983789 Brachypodium distachyon
Bradi1g33310 2.0kb upstream 2.0kb upstream 8136 true Bd1: 28974654-28982789 Brachypodium distachyon
Bradi1g33310 2.0kb upstream 2.0kb upstream 2000 false Bd1: 28974654-28976653 Brachypodium distachyon
Bradi1g33310 2.0kb downstream 2.0kb downstream 8136 true Bd1: 28976654-28984789 Brachypodium distachyon
Bradi1g33310 2.0kb downstream 2.0kb downstream 2000 false Bd1: 28982790-28984789 Brachypodium distachyon
Bradi1g33310 5.0kb upstream 5.0kb upstream 11136 true Bd1: 28971654-28982789 Brachypodium distachyon
Bradi1g33310 5.0kb upstream 5.0kb upstream 5000 false Bd1: 28971654-28976653 Brachypodium distachyon
Bradi1g33310 5.0kb downstream 5.0kb downstream 11136 true Bd1: 28976654-28987789 Brachypodium distachyon
Bradi1g33310 5.0kb downstream 5.0kb downstream 5000 false Bd1: 28982790-28987789 Brachypodium distachyon
Bradi1g33310 10.0kb upstream 10.0kb upstream 16136 true Bd1: 28966654-28982789 Brachypodium distachyon
Bradi1g33310 10.0kb upstream 10.0kb upstream 10000 false Bd1: 28966654-28976653 Brachypodium distachyon
Bradi1g33310 10.0kb downstream 10.0kb downstream 16136 true Bd1: 28976654-28992789 Brachypodium distachyon
Bradi1g33310 10.0kb downstream 10.0kb downstream 10000 false Bd1: 28982790-28992789 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580075 5269 Grass View MSA
122047763 5273 Angiosperm View MSA
123428944 5275 Viridiplantae View MSA
121344712 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.767        
cufflinks 6.955        
cufflinks 7.522        
cufflinks 6.987        
cufflinks 12.245     High High
cufflinks 5.237        
cufflinks 5.879        
cufflinks 6.221        
cufflinks 5.203        
cufflinks 7.367        
cufflinks 5.323        
cufflinks 5.4        
cufflinks 4.229       Low
cufflinks 4.433       Low
cufflinks 7.931        
cufflinks 5.465        
cufflinks 7.721        
cufflinks 9.858        
cufflinks 22.329     High High
cufflinks 26.569     High High
cufflinks 7.909        
cufflinks 7.335        
cufflinks 6.339        
cufflinks 5.554        
cufflinks 5.783        
cufflinks 8.189        
cufflinks 5.482        
cufflinks 8.315        
cufflinks 7.359        
cufflinks 8.271        

0 Strain