Gene : Bradi5g13880 B. distachyon v3.1
Defline:  (1 of 1) PF09588 - YqaJ-like viral recombinase domain (YqaJ) Genomic Order:  1533
Name:  ? Bradi5g13880 Secondary Identifier:  ? PAC:32811045
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g13880 0.5kb upstream 0.5kb upstream 2546 true Bd5: 17462645-17465190 Brachypodium distachyon
Bradi5g13880 0.5kb upstream 0.5kb upstream 500 false Bd5: 17462645-17463144 Brachypodium distachyon
Bradi5g13880 0.5kb downstream 0.5kb downstream 2546 true Bd5: 17463145-17465690 Brachypodium distachyon
Bradi5g13880 0.5kb downstream 0.5kb downstream 500 false Bd5: 17465191-17465690 Brachypodium distachyon
Bradi5g13880 1.0kb upstream 1.0kb upstream 3046 true Bd5: 17462145-17465190 Brachypodium distachyon
Bradi5g13880 1.0kb upstream 1.0kb upstream 1000 false Bd5: 17462145-17463144 Brachypodium distachyon
Bradi5g13880 1.0kb downstream 1.0kb downstream 3046 true Bd5: 17463145-17466190 Brachypodium distachyon
Bradi5g13880 1.0kb downstream 1.0kb downstream 1000 false Bd5: 17465191-17466190 Brachypodium distachyon
Bradi5g13880 2.0kb upstream 2.0kb upstream 4046 true Bd5: 17461145-17465190 Brachypodium distachyon
Bradi5g13880 2.0kb upstream 2.0kb upstream 2000 false Bd5: 17461145-17463144 Brachypodium distachyon
Bradi5g13880 2.0kb downstream 2.0kb downstream 4046 true Bd5: 17463145-17467190 Brachypodium distachyon
Bradi5g13880 2.0kb downstream 2.0kb downstream 2000 false Bd5: 17465191-17467190 Brachypodium distachyon
Bradi5g13880 5.0kb upstream 5.0kb upstream 7046 true Bd5: 17458145-17465190 Brachypodium distachyon
Bradi5g13880 5.0kb upstream 5.0kb upstream 5000 false Bd5: 17458145-17463144 Brachypodium distachyon
Bradi5g13880 5.0kb downstream 5.0kb downstream 7046 true Bd5: 17463145-17470190 Brachypodium distachyon
Bradi5g13880 5.0kb downstream 5.0kb downstream 5000 false Bd5: 17465191-17470190 Brachypodium distachyon
Bradi5g13880 10.0kb upstream 10.0kb upstream 12046 true Bd5: 17453145-17465190 Brachypodium distachyon
Bradi5g13880 10.0kb upstream 10.0kb upstream 10000 false Bd5: 17453145-17463144 Brachypodium distachyon
Bradi5g13880 10.0kb downstream 10.0kb downstream 12046 true Bd5: 17463145-17475190 Brachypodium distachyon
Bradi5g13880 10.0kb downstream 10.0kb downstream 10000 false Bd5: 17465191-17475190 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572076 5269 Grass View MSA
122045989 5273 Angiosperm View MSA
123429076 5275 Viridiplantae View MSA
121346090 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.149     High  
cufflinks 11.322     High  
cufflinks 11.66     High  
cufflinks 11.52     High  
cufflinks 7.537        
cufflinks 9.98     High  
cufflinks 10.74     High  
cufflinks 10.619     High  
cufflinks 8.641        
cufflinks 13.067     High High
cufflinks 10.925     High  
cufflinks 8.651        
cufflinks 7.735     High  
cufflinks 9.301     High  
cufflinks 9.671     High  
cufflinks 11.316     High  
cufflinks 13.456     High High
cufflinks 6.772       Low
cufflinks 13.355     High High
cufflinks 19.856     High High
cufflinks 9.29        
cufflinks 10.25     High  
cufflinks 8.447        
cufflinks 6.961       Low
cufflinks 9.218        
cufflinks 11.249     High  
cufflinks 8.144        
cufflinks 12.532     High  
cufflinks 13.792     High High
cufflinks 9.487        

0 Strain