Gene : Bradi1g33347 B. distachyon v3.1
Defline:  (1 of 1) PTHR24093:SF272 - CADMIUM/ZINC-TRANSPORTING ATPASE HMA1, CHLOROPLASTIC-RELATED Genomic Order:  4245
Name:  ? Bradi1g33347 Secondary Identifier:  ? PAC:32803882
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g33347 0.5kb upstream 0.5kb upstream 9357 true Bd1: 29001763-29011119 Brachypodium distachyon
Bradi1g33347 0.5kb upstream 0.5kb upstream 500 false Bd1: 29010620-29011119 Brachypodium distachyon
Bradi1g33347 0.5kb downstream 0.5kb downstream 9357 true Bd1: 29001263-29010619 Brachypodium distachyon
Bradi1g33347 0.5kb downstream 0.5kb downstream 500 false Bd1: 29001263-29001762 Brachypodium distachyon
Bradi1g33347 1.0kb upstream 1.0kb upstream 9857 true Bd1: 29001763-29011619 Brachypodium distachyon
Bradi1g33347 1.0kb upstream 1.0kb upstream 1000 false Bd1: 29010620-29011619 Brachypodium distachyon
Bradi1g33347 1.0kb downstream 1.0kb downstream 9857 true Bd1: 29000763-29010619 Brachypodium distachyon
Bradi1g33347 1.0kb downstream 1.0kb downstream 1000 false Bd1: 29000763-29001762 Brachypodium distachyon
Bradi1g33347 2.0kb upstream 2.0kb upstream 10857 true Bd1: 29001763-29012619 Brachypodium distachyon
Bradi1g33347 2.0kb upstream 2.0kb upstream 2000 false Bd1: 29010620-29012619 Brachypodium distachyon
Bradi1g33347 2.0kb downstream 2.0kb downstream 10857 true Bd1: 28999763-29010619 Brachypodium distachyon
Bradi1g33347 2.0kb downstream 2.0kb downstream 2000 false Bd1: 28999763-29001762 Brachypodium distachyon
Bradi1g33347 5.0kb upstream 5.0kb upstream 13857 true Bd1: 29001763-29015619 Brachypodium distachyon
Bradi1g33347 5.0kb upstream 5.0kb upstream 5000 false Bd1: 29010620-29015619 Brachypodium distachyon
Bradi1g33347 5.0kb downstream 5.0kb downstream 13857 true Bd1: 28996763-29010619 Brachypodium distachyon
Bradi1g33347 5.0kb downstream 5.0kb downstream 5000 false Bd1: 28996763-29001762 Brachypodium distachyon
Bradi1g33347 10.0kb upstream 10.0kb upstream 18857 true Bd1: 29001763-29020619 Brachypodium distachyon
Bradi1g33347 10.0kb upstream 10.0kb upstream 10000 false Bd1: 29010620-29020619 Brachypodium distachyon
Bradi1g33347 10.0kb downstream 10.0kb downstream 18857 true Bd1: 28991763-29010619 Brachypodium distachyon
Bradi1g33347 10.0kb downstream 10.0kb downstream 10000 false Bd1: 28991763-29001762 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573938 5269 Grass View MSA
122049253 5273 Angiosperm View MSA
121346683 5274 Embryophyte View MSA
123427971 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.874     High  
cufflinks 7.486        
cufflinks 8.624        
cufflinks 6.63        
cufflinks 8.456        
cufflinks 10.915     High  
cufflinks 8.455        
cufflinks 13.072     High  
cufflinks 12.862     High  
cufflinks 10.973     High  
cufflinks 19.592     High High
cufflinks 13.024     High  
cufflinks 17.364     High High
cufflinks 17.711     High High
cufflinks 11.438     High  
cufflinks 10.63     High  
cufflinks 6.467        
cufflinks 3.134       Low
cufflinks 6.703        
cufflinks 5.882        
cufflinks 3.657       Low
cufflinks 14.962     High High
cufflinks 12.512     High  
cufflinks 11.831     High  
cufflinks 8.874        
cufflinks 9.695        
cufflinks 19.891     High High
cufflinks 9.572        
cufflinks 10.634        
cufflinks 4.532       Low

0 Strain