Gene : Bradi5g17657 B. distachyon v3.1
Defline:  (1 of 1) PTHR10543:SF36 - RETINOID ISOMEROHYDROLASE Genomic Order:  2038
Name:  ? Bradi5g17657 Secondary Identifier:  ? PAC:32807941
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7101 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g17657 0.5kb upstream 0.5kb upstream 4191 true Bd5: 21043256-21047446 Brachypodium distachyon
Bradi5g17657 0.5kb upstream 0.5kb upstream 500 false Bd5: 21043256-21043755 Brachypodium distachyon
Bradi5g17657 0.5kb downstream 0.5kb downstream 4191 true Bd5: 21043756-21047946 Brachypodium distachyon
Bradi5g17657 0.5kb downstream 0.5kb downstream 500 false Bd5: 21047447-21047946 Brachypodium distachyon
Bradi5g17657 1.0kb upstream 1.0kb upstream 4691 true Bd5: 21042756-21047446 Brachypodium distachyon
Bradi5g17657 1.0kb upstream 1.0kb upstream 1000 false Bd5: 21042756-21043755 Brachypodium distachyon
Bradi5g17657 1.0kb downstream 1.0kb downstream 4691 true Bd5: 21043756-21048446 Brachypodium distachyon
Bradi5g17657 1.0kb downstream 1.0kb downstream 1000 false Bd5: 21047447-21048446 Brachypodium distachyon
Bradi5g17657 2.0kb upstream 2.0kb upstream 5691 true Bd5: 21041756-21047446 Brachypodium distachyon
Bradi5g17657 2.0kb upstream 2.0kb upstream 2000 false Bd5: 21041756-21043755 Brachypodium distachyon
Bradi5g17657 2.0kb downstream 2.0kb downstream 5691 true Bd5: 21043756-21049446 Brachypodium distachyon
Bradi5g17657 2.0kb downstream 2.0kb downstream 2000 false Bd5: 21047447-21049446 Brachypodium distachyon
Bradi5g17657 5.0kb upstream 5.0kb upstream 8691 true Bd5: 21038756-21047446 Brachypodium distachyon
Bradi5g17657 5.0kb upstream 5.0kb upstream 5000 false Bd5: 21038756-21043755 Brachypodium distachyon
Bradi5g17657 5.0kb downstream 5.0kb downstream 8691 true Bd5: 21043756-21052446 Brachypodium distachyon
Bradi5g17657 5.0kb downstream 5.0kb downstream 5000 false Bd5: 21047447-21052446 Brachypodium distachyon
Bradi5g17657 10.0kb upstream 10.0kb upstream 13691 true Bd5: 21033756-21047446 Brachypodium distachyon
Bradi5g17657 10.0kb upstream 10.0kb upstream 10000 false Bd5: 21033756-21043755 Brachypodium distachyon
Bradi5g17657 10.0kb downstream 10.0kb downstream 13691 true Bd5: 21043756-21057446 Brachypodium distachyon
Bradi5g17657 10.0kb downstream 10.0kb downstream 10000 false Bd5: 21047447-21057446 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573373 5269 Grass View MSA
122047914 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344181 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.129        
cufflinks 0.107        
cufflinks 0.079     Low  
cufflinks 0.09     Low  
cufflinks 0.182        
cufflinks 0.075     Low  
cufflinks 0.131        
cufflinks 0.146        
cufflinks 0.129        
cufflinks 0.234        
cufflinks 0.037     Low Low
cufflinks 0.052     Low  
cufflinks 0.075        
cufflinks 0.032     Low Low
cufflinks 0.058     Low  
cufflinks 0.149        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.446       High
cufflinks 0.09     Low  
cufflinks 0.124     Low  
cufflinks 1.722       High
cufflinks 0.125     Low  
cufflinks 0.161        
cufflinks 0.129        
cufflinks 0.11        
cufflinks 0.057     Low  
cufflinks 0.295       High
cufflinks 0.075     Low  
cufflinks 0.143        
cufflinks 0.242       High

0 Strain