Gene : Bradi5g14870 B. distachyon v3.1
Defline:  (1 of 1) KOG0531//KOG1947//KOG4308 - Protein phosphatase 1, regulatory subunit, and related proteins // Leucine rich repeat proteins, some proteins contain F-box // LRR-containing protein Genomic Order:  1672
Name:  ? Bradi5g14870 Secondary Identifier:  ? PAC:32811969
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g14870 0.5kb upstream 0.5kb upstream 8578 true Bd5: 18428742-18437319 Brachypodium distachyon
Bradi5g14870 0.5kb upstream 0.5kb upstream 500 false Bd5: 18436820-18437319 Brachypodium distachyon
Bradi5g14870 0.5kb downstream 0.5kb downstream 8578 true Bd5: 18428242-18436819 Brachypodium distachyon
Bradi5g14870 0.5kb downstream 0.5kb downstream 500 false Bd5: 18428242-18428741 Brachypodium distachyon
Bradi5g14870 1.0kb upstream 1.0kb upstream 9078 true Bd5: 18428742-18437819 Brachypodium distachyon
Bradi5g14870 1.0kb upstream 1.0kb upstream 1000 false Bd5: 18436820-18437819 Brachypodium distachyon
Bradi5g14870 1.0kb downstream 1.0kb downstream 9078 true Bd5: 18427742-18436819 Brachypodium distachyon
Bradi5g14870 1.0kb downstream 1.0kb downstream 1000 false Bd5: 18427742-18428741 Brachypodium distachyon
Bradi5g14870 2.0kb upstream 2.0kb upstream 10078 true Bd5: 18428742-18438819 Brachypodium distachyon
Bradi5g14870 2.0kb upstream 2.0kb upstream 2000 false Bd5: 18436820-18438819 Brachypodium distachyon
Bradi5g14870 2.0kb downstream 2.0kb downstream 10078 true Bd5: 18426742-18436819 Brachypodium distachyon
Bradi5g14870 2.0kb downstream 2.0kb downstream 2000 false Bd5: 18426742-18428741 Brachypodium distachyon
Bradi5g14870 5.0kb upstream 5.0kb upstream 13078 true Bd5: 18428742-18441819 Brachypodium distachyon
Bradi5g14870 5.0kb upstream 5.0kb upstream 5000 false Bd5: 18436820-18441819 Brachypodium distachyon
Bradi5g14870 5.0kb downstream 5.0kb downstream 13078 true Bd5: 18423742-18436819 Brachypodium distachyon
Bradi5g14870 5.0kb downstream 5.0kb downstream 5000 false Bd5: 18423742-18428741 Brachypodium distachyon
Bradi5g14870 10.0kb upstream 10.0kb upstream 18078 true Bd5: 18428742-18446819 Brachypodium distachyon
Bradi5g14870 10.0kb upstream 10.0kb upstream 10000 false Bd5: 18436820-18446819 Brachypodium distachyon
Bradi5g14870 10.0kb downstream 10.0kb downstream 18078 true Bd5: 18418742-18436819 Brachypodium distachyon
Bradi5g14870 10.0kb downstream 10.0kb downstream 10000 false Bd5: 18418742-18428741 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580349 5269 Grass View MSA
122042006 5273 Angiosperm View MSA
123428966 5275 Viridiplantae View MSA
121344992 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.138       Low
cufflinks 2.533        
cufflinks 6.954        
cufflinks 1.715       Low
cufflinks 4.706        
cufflinks 3.873        
cufflinks 3.424        
cufflinks 3.118        
cufflinks 3.532        
cufflinks 7.872       High
cufflinks 14.319     High High
cufflinks 4.089        
cufflinks 11.228     High High
cufflinks 8.42     High High
cufflinks 2.388        
cufflinks 5.3        
cufflinks 3.667        
cufflinks 3.079        
cufflinks 5.658        
cufflinks 2.524        
cufflinks 2.073       Low
cufflinks 9.096       High
cufflinks 3.183        
cufflinks 2.515        
cufflinks 2.566        
cufflinks 7.888       High
cufflinks 8.685       High
cufflinks 8.383       High
cufflinks 6.729        
cufflinks 3.309        

0 Strain