Gene : Bradi1g33850 B. distachyon v3.1
Defline:  (1 of 2) K03016 - DNA-directed RNA polymerases I, II, and III subunit RPABC3 (RPB8, POLR2H) Genomic Order:  4317
Name:  ? Bradi1g33850 Secondary Identifier:  ? PAC:32792772
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g33850 0.5kb upstream 0.5kb upstream 3843 true Bd1: 29512284-29516126 Brachypodium distachyon
Bradi1g33850 0.5kb upstream 0.5kb upstream 500 false Bd1: 29515627-29516126 Brachypodium distachyon
Bradi1g33850 0.5kb downstream 0.5kb downstream 3843 true Bd1: 29511784-29515626 Brachypodium distachyon
Bradi1g33850 0.5kb downstream 0.5kb downstream 500 false Bd1: 29511784-29512283 Brachypodium distachyon
Bradi1g33850 1.0kb upstream 1.0kb upstream 4343 true Bd1: 29512284-29516626 Brachypodium distachyon
Bradi1g33850 1.0kb upstream 1.0kb upstream 1000 false Bd1: 29515627-29516626 Brachypodium distachyon
Bradi1g33850 1.0kb downstream 1.0kb downstream 4343 true Bd1: 29511284-29515626 Brachypodium distachyon
Bradi1g33850 1.0kb downstream 1.0kb downstream 1000 false Bd1: 29511284-29512283 Brachypodium distachyon
Bradi1g33850 2.0kb upstream 2.0kb upstream 5343 true Bd1: 29512284-29517626 Brachypodium distachyon
Bradi1g33850 2.0kb upstream 2.0kb upstream 2000 false Bd1: 29515627-29517626 Brachypodium distachyon
Bradi1g33850 2.0kb downstream 2.0kb downstream 5343 true Bd1: 29510284-29515626 Brachypodium distachyon
Bradi1g33850 2.0kb downstream 2.0kb downstream 2000 false Bd1: 29510284-29512283 Brachypodium distachyon
Bradi1g33850 5.0kb upstream 5.0kb upstream 8343 true Bd1: 29512284-29520626 Brachypodium distachyon
Bradi1g33850 5.0kb upstream 5.0kb upstream 5000 false Bd1: 29515627-29520626 Brachypodium distachyon
Bradi1g33850 5.0kb downstream 5.0kb downstream 8343 true Bd1: 29507284-29515626 Brachypodium distachyon
Bradi1g33850 5.0kb downstream 5.0kb downstream 5000 false Bd1: 29507284-29512283 Brachypodium distachyon
Bradi1g33850 10.0kb upstream 10.0kb upstream 13343 true Bd1: 29512284-29525626 Brachypodium distachyon
Bradi1g33850 10.0kb upstream 10.0kb upstream 10000 false Bd1: 29515627-29525626 Brachypodium distachyon
Bradi1g33850 10.0kb downstream 10.0kb downstream 13343 true Bd1: 29502284-29515626 Brachypodium distachyon
Bradi1g33850 10.0kb downstream 10.0kb downstream 10000 false Bd1: 29502284-29512283 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572800 5269 Grass View MSA
122051264 5273 Angiosperm View MSA
121346486 5274 Embryophyte View MSA
123424696 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.939        
cufflinks 9.416        
cufflinks 8.694        
cufflinks 9.511        
cufflinks 8.852        
cufflinks 8.632        
cufflinks 9.575     High  
cufflinks 8.932        
cufflinks 8.475        
cufflinks 10.594     High  
cufflinks 6.84        
cufflinks 6.642       Low
cufflinks 4.724       Low
cufflinks 6.793        
cufflinks 7.283        
cufflinks 8.572        
cufflinks 14.132     High High
cufflinks 13.021     High High
cufflinks 12.476       High
cufflinks 6.349       Low
cufflinks 12.138     High High
cufflinks 7.413        
cufflinks 7.652        
cufflinks 7.297        
cufflinks 8.416        
cufflinks 8.782        
cufflinks 7.93        
cufflinks 8.893        
cufflinks 7.548        
cufflinks 9.307        

0 Strain