Gene : Bradi5g16050 B. distachyon v3.1
Defline:  (1 of 6) PF05757 - Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ) Genomic Order:  1827
Name:  ? Bradi5g16050 Secondary Identifier:  ? PAC:32809429
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g16050 0.5kb upstream 0.5kb upstream 4453 true Bd5: 19587469-19591921 Brachypodium distachyon
Bradi5g16050 0.5kb upstream 0.5kb upstream 500 false Bd5: 19587469-19587968 Brachypodium distachyon
Bradi5g16050 0.5kb downstream 0.5kb downstream 4453 true Bd5: 19587969-19592421 Brachypodium distachyon
Bradi5g16050 0.5kb downstream 0.5kb downstream 500 false Bd5: 19591922-19592421 Brachypodium distachyon
Bradi5g16050 1.0kb upstream 1.0kb upstream 4953 true Bd5: 19586969-19591921 Brachypodium distachyon
Bradi5g16050 1.0kb upstream 1.0kb upstream 1000 false Bd5: 19586969-19587968 Brachypodium distachyon
Bradi5g16050 1.0kb downstream 1.0kb downstream 4953 true Bd5: 19587969-19592921 Brachypodium distachyon
Bradi5g16050 1.0kb downstream 1.0kb downstream 1000 false Bd5: 19591922-19592921 Brachypodium distachyon
Bradi5g16050 2.0kb upstream 2.0kb upstream 5953 true Bd5: 19585969-19591921 Brachypodium distachyon
Bradi5g16050 2.0kb upstream 2.0kb upstream 2000 false Bd5: 19585969-19587968 Brachypodium distachyon
Bradi5g16050 2.0kb downstream 2.0kb downstream 5953 true Bd5: 19587969-19593921 Brachypodium distachyon
Bradi5g16050 2.0kb downstream 2.0kb downstream 2000 false Bd5: 19591922-19593921 Brachypodium distachyon
Bradi5g16050 5.0kb upstream 5.0kb upstream 8953 true Bd5: 19582969-19591921 Brachypodium distachyon
Bradi5g16050 5.0kb upstream 5.0kb upstream 5000 false Bd5: 19582969-19587968 Brachypodium distachyon
Bradi5g16050 5.0kb downstream 5.0kb downstream 8953 true Bd5: 19587969-19596921 Brachypodium distachyon
Bradi5g16050 5.0kb downstream 5.0kb downstream 5000 false Bd5: 19591922-19596921 Brachypodium distachyon
Bradi5g16050 10.0kb upstream 10.0kb upstream 13953 true Bd5: 19577969-19591921 Brachypodium distachyon
Bradi5g16050 10.0kb upstream 10.0kb upstream 10000 false Bd5: 19577969-19587968 Brachypodium distachyon
Bradi5g16050 10.0kb downstream 10.0kb downstream 13953 true Bd5: 19587969-19601921 Brachypodium distachyon
Bradi5g16050 10.0kb downstream 10.0kb downstream 10000 false Bd5: 19591922-19601921 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588669 5269 Grass View MSA
122049386 5273 Angiosperm View MSA
121311379 5274 Embryophyte View MSA
123348684 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.341        
cufflinks 0.29        
cufflinks 0.259        
cufflinks 0.277        
cufflinks 0.245        
cufflinks 0.161        
cufflinks 0.215        
cufflinks 0.082       Low
cufflinks 0.071     Low Low
cufflinks 0.214        
cufflinks 0.273        
cufflinks 0.113       Low
cufflinks 0.168        
cufflinks 0.163        
cufflinks 0.189        
cufflinks 0.142        
cufflinks 0.134     Low  
cufflinks 0.814       High
cufflinks 0.304        
cufflinks 2.088       High
cufflinks 0.516       High
cufflinks 0.194        
cufflinks 0.084     Low Low
cufflinks 0.102     Low Low
cufflinks 0.115       Low
cufflinks 0.359        
cufflinks 0.265        
cufflinks 0.315        
cufflinks 0.182        
cufflinks 0.276        

0 Strain