Gene : Bradi1g34200 B. distachyon v3.1
Defline:  (1 of 11) PF00428 - 60s Acidic ribosomal protein (Ribosomal_60s) Genomic Order:  4364
Name:  ? Bradi1g34200 Secondary Identifier:  ? PAC:32802422
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g34200 0.5kb upstream 0.5kb upstream 1964 true Bd1: 29901657-29903620 Brachypodium distachyon
Bradi1g34200 0.5kb upstream 0.5kb upstream 500 false Bd1: 29903121-29903620 Brachypodium distachyon
Bradi1g34200 0.5kb downstream 0.5kb downstream 1964 true Bd1: 29901157-29903120 Brachypodium distachyon
Bradi1g34200 0.5kb downstream 0.5kb downstream 500 false Bd1: 29901157-29901656 Brachypodium distachyon
Bradi1g34200 1.0kb upstream 1.0kb upstream 2464 true Bd1: 29901657-29904120 Brachypodium distachyon
Bradi1g34200 1.0kb upstream 1.0kb upstream 1000 false Bd1: 29903121-29904120 Brachypodium distachyon
Bradi1g34200 1.0kb downstream 1.0kb downstream 2464 true Bd1: 29900657-29903120 Brachypodium distachyon
Bradi1g34200 1.0kb downstream 1.0kb downstream 1000 false Bd1: 29900657-29901656 Brachypodium distachyon
Bradi1g34200 2.0kb upstream 2.0kb upstream 3464 true Bd1: 29901657-29905120 Brachypodium distachyon
Bradi1g34200 2.0kb upstream 2.0kb upstream 2000 false Bd1: 29903121-29905120 Brachypodium distachyon
Bradi1g34200 2.0kb downstream 2.0kb downstream 3464 true Bd1: 29899657-29903120 Brachypodium distachyon
Bradi1g34200 2.0kb downstream 2.0kb downstream 2000 false Bd1: 29899657-29901656 Brachypodium distachyon
Bradi1g34200 5.0kb upstream 5.0kb upstream 6464 true Bd1: 29901657-29908120 Brachypodium distachyon
Bradi1g34200 5.0kb upstream 5.0kb upstream 5000 false Bd1: 29903121-29908120 Brachypodium distachyon
Bradi1g34200 5.0kb downstream 5.0kb downstream 6464 true Bd1: 29896657-29903120 Brachypodium distachyon
Bradi1g34200 5.0kb downstream 5.0kb downstream 5000 false Bd1: 29896657-29901656 Brachypodium distachyon
Bradi1g34200 10.0kb upstream 10.0kb upstream 11464 true Bd1: 29901657-29913120 Brachypodium distachyon
Bradi1g34200 10.0kb upstream 10.0kb upstream 10000 false Bd1: 29903121-29913120 Brachypodium distachyon
Bradi1g34200 10.0kb downstream 10.0kb downstream 11464 true Bd1: 29891657-29903120 Brachypodium distachyon
Bradi1g34200 10.0kb downstream 10.0kb downstream 10000 false Bd1: 29891657-29901656 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577323 5269 Grass View MSA
122041994 5273 Angiosperm View MSA
121347271 5274 Embryophyte View MSA
123424793 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 136.042     High  
cufflinks 110.703     High  
cufflinks 106.457     High  
cufflinks 122.636     High  
cufflinks 161.649     High  
cufflinks 95.33     High  
cufflinks 138.0     High  
cufflinks 105.2     High  
cufflinks 98.764     High  
cufflinks 179.292     High  
cufflinks 39.053     High Low
cufflinks 52.819     High Low
cufflinks 21.263     High Low
cufflinks 30.068     High Low
cufflinks 40.742     High Low
cufflinks 104.862     High  
cufflinks 250.466     High High
cufflinks 164.121     High  
cufflinks 412.608     High High
cufflinks 127.839     High  
cufflinks 268.306     High High
cufflinks 111.132     High  
cufflinks 118.218     High  
cufflinks 99.029     High  
cufflinks 133.904     High  
cufflinks 122.447     High  
cufflinks 30.0     High Low
cufflinks 166.234     High  
cufflinks 151.324     High  
cufflinks 126.923     High  

0 Strain