Gene : Bradi5g18540 B. distachyon v3.1
Defline:  (1 of 2) PTHR22891//PTHR22891:SF34 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // SUBFAMILY NOT NAMED Genomic Order:  2142
Name:  ? Bradi5g18540 Secondary Identifier:  ? PAC:32807101
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g18540 0.5kb upstream 0.5kb upstream 8861 true Bd5: 21720455-21729315 Brachypodium distachyon
Bradi5g18540 0.5kb upstream 0.5kb upstream 500 false Bd5: 21728816-21729315 Brachypodium distachyon
Bradi5g18540 0.5kb downstream 0.5kb downstream 8861 true Bd5: 21719955-21728815 Brachypodium distachyon
Bradi5g18540 0.5kb downstream 0.5kb downstream 500 false Bd5: 21719955-21720454 Brachypodium distachyon
Bradi5g18540 1.0kb upstream 1.0kb upstream 9361 true Bd5: 21720455-21729815 Brachypodium distachyon
Bradi5g18540 1.0kb upstream 1.0kb upstream 1000 false Bd5: 21728816-21729815 Brachypodium distachyon
Bradi5g18540 1.0kb downstream 1.0kb downstream 9361 true Bd5: 21719455-21728815 Brachypodium distachyon
Bradi5g18540 1.0kb downstream 1.0kb downstream 1000 false Bd5: 21719455-21720454 Brachypodium distachyon
Bradi5g18540 2.0kb upstream 2.0kb upstream 10361 true Bd5: 21720455-21730815 Brachypodium distachyon
Bradi5g18540 2.0kb upstream 2.0kb upstream 2000 false Bd5: 21728816-21730815 Brachypodium distachyon
Bradi5g18540 2.0kb downstream 2.0kb downstream 10361 true Bd5: 21718455-21728815 Brachypodium distachyon
Bradi5g18540 2.0kb downstream 2.0kb downstream 2000 false Bd5: 21718455-21720454 Brachypodium distachyon
Bradi5g18540 5.0kb upstream 5.0kb upstream 13361 true Bd5: 21720455-21733815 Brachypodium distachyon
Bradi5g18540 5.0kb upstream 5.0kb upstream 5000 false Bd5: 21728816-21733815 Brachypodium distachyon
Bradi5g18540 5.0kb downstream 5.0kb downstream 13361 true Bd5: 21715455-21728815 Brachypodium distachyon
Bradi5g18540 5.0kb downstream 5.0kb downstream 5000 false Bd5: 21715455-21720454 Brachypodium distachyon
Bradi5g18540 10.0kb upstream 10.0kb upstream 18361 true Bd5: 21720455-21738815 Brachypodium distachyon
Bradi5g18540 10.0kb upstream 10.0kb upstream 10000 false Bd5: 21728816-21738815 Brachypodium distachyon
Bradi5g18540 10.0kb downstream 10.0kb downstream 18361 true Bd5: 21710455-21728815 Brachypodium distachyon
Bradi5g18540 10.0kb downstream 10.0kb downstream 10000 false Bd5: 21710455-21720454 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573264 5269 Grass View MSA
122045279 5273 Angiosperm View MSA
121345149 5274 Embryophyte View MSA
123428465 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.982        
cufflinks 13.217     High  
cufflinks 15.286     High  
cufflinks 9.79        
cufflinks 3.831       Low
cufflinks 12.473     High  
cufflinks 11.399     High  
cufflinks 10.398     High  
cufflinks 12.361     High  
cufflinks 8.898        
cufflinks 10.078     High  
cufflinks 12.018     High  
cufflinks 9.77     High  
cufflinks 6.799        
cufflinks 6.295        
cufflinks 12.871     High  
cufflinks 5.886        
cufflinks 23.035     High High
cufflinks 6.829        
cufflinks 1.968       Low
cufflinks 7.673        
cufflinks 15.579     High High
cufflinks 10.204     High  
cufflinks 9.966     High  
cufflinks 9.078        
cufflinks 13.568     High  
cufflinks 9.907     High  
cufflinks 12.362     High  
cufflinks 12.066     High  
cufflinks 13.382     High  

0 Strain