Gene : Bradi1g34340 B. distachyon v3.1
Defline:  (1 of 15) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  4381
Name:  ? Bradi1g34340 Secondary Identifier:  ? PAC:32793420
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g34340 0.5kb upstream 0.5kb upstream 10138 true Bd1: 30028056-30038193 Brachypodium distachyon
Bradi1g34340 0.5kb upstream 0.5kb upstream 500 false Bd1: 30028056-30028555 Brachypodium distachyon
Bradi1g34340 0.5kb downstream 0.5kb downstream 10138 true Bd1: 30028556-30038693 Brachypodium distachyon
Bradi1g34340 0.5kb downstream 0.5kb downstream 500 false Bd1: 30038194-30038693 Brachypodium distachyon
Bradi1g34340 1.0kb upstream 1.0kb upstream 10638 true Bd1: 30027556-30038193 Brachypodium distachyon
Bradi1g34340 1.0kb upstream 1.0kb upstream 1000 false Bd1: 30027556-30028555 Brachypodium distachyon
Bradi1g34340 1.0kb downstream 1.0kb downstream 10638 true Bd1: 30028556-30039193 Brachypodium distachyon
Bradi1g34340 1.0kb downstream 1.0kb downstream 1000 false Bd1: 30038194-30039193 Brachypodium distachyon
Bradi1g34340 2.0kb upstream 2.0kb upstream 11638 true Bd1: 30026556-30038193 Brachypodium distachyon
Bradi1g34340 2.0kb upstream 2.0kb upstream 2000 false Bd1: 30026556-30028555 Brachypodium distachyon
Bradi1g34340 2.0kb downstream 2.0kb downstream 11638 true Bd1: 30028556-30040193 Brachypodium distachyon
Bradi1g34340 2.0kb downstream 2.0kb downstream 2000 false Bd1: 30038194-30040193 Brachypodium distachyon
Bradi1g34340 5.0kb upstream 5.0kb upstream 14638 true Bd1: 30023556-30038193 Brachypodium distachyon
Bradi1g34340 5.0kb upstream 5.0kb upstream 5000 false Bd1: 30023556-30028555 Brachypodium distachyon
Bradi1g34340 5.0kb downstream 5.0kb downstream 14638 true Bd1: 30028556-30043193 Brachypodium distachyon
Bradi1g34340 5.0kb downstream 5.0kb downstream 5000 false Bd1: 30038194-30043193 Brachypodium distachyon
Bradi1g34340 10.0kb upstream 10.0kb upstream 19638 true Bd1: 30018556-30038193 Brachypodium distachyon
Bradi1g34340 10.0kb upstream 10.0kb upstream 10000 false Bd1: 30018556-30028555 Brachypodium distachyon
Bradi1g34340 10.0kb downstream 10.0kb downstream 19638 true Bd1: 30028556-30048193 Brachypodium distachyon
Bradi1g34340 10.0kb downstream 10.0kb downstream 10000 false Bd1: 30038194-30048193 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578667 5269 Grass View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.46        
cufflinks 2.457        
cufflinks 3.266        
cufflinks 1.706        
cufflinks 2.021        
cufflinks 2.303        
cufflinks 2.27        
cufflinks 2.656        
cufflinks 2.843        
cufflinks 2.206        
cufflinks 3.811        
cufflinks 2.685        
cufflinks 3.372        
cufflinks 1.699        
cufflinks 1.683        
cufflinks 2.878        
cufflinks 0.916       Low
cufflinks 16.089     High High
cufflinks 4.55        
cufflinks 5.01       High
cufflinks 4.764        
cufflinks 4.113        
cufflinks 2.259        
cufflinks 1.83        
cufflinks 1.716        
cufflinks 2.474        
cufflinks 2.487        
cufflinks 3.09        
cufflinks 2.586        
cufflinks 3.226        

0 Strain