Gene : Bradi1g34537 B. distachyon v3.1
Defline:  (1 of 1) PTHR10920:SF12 - TRNA (CYTIDINE(32)/GUANOSINE(34)-2'-O)-METHYLTRANSFERASE-RELATED Genomic Order:  4413
Name:  ? Bradi1g34537 Secondary Identifier:  ? PAC:32798458
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6829 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g34537 0.5kb upstream 0.5kb upstream 5551 true Bd1: 30256646-30262196 Brachypodium distachyon
Bradi1g34537 0.5kb upstream 0.5kb upstream 500 false Bd1: 30256646-30257145 Brachypodium distachyon
Bradi1g34537 0.5kb downstream 0.5kb downstream 5551 true Bd1: 30257146-30262696 Brachypodium distachyon
Bradi1g34537 0.5kb downstream 0.5kb downstream 500 false Bd1: 30262197-30262696 Brachypodium distachyon
Bradi1g34537 1.0kb upstream 1.0kb upstream 6051 true Bd1: 30256146-30262196 Brachypodium distachyon
Bradi1g34537 1.0kb upstream 1.0kb upstream 1000 false Bd1: 30256146-30257145 Brachypodium distachyon
Bradi1g34537 1.0kb downstream 1.0kb downstream 6051 true Bd1: 30257146-30263196 Brachypodium distachyon
Bradi1g34537 1.0kb downstream 1.0kb downstream 1000 false Bd1: 30262197-30263196 Brachypodium distachyon
Bradi1g34537 2.0kb upstream 2.0kb upstream 7051 true Bd1: 30255146-30262196 Brachypodium distachyon
Bradi1g34537 2.0kb upstream 2.0kb upstream 2000 false Bd1: 30255146-30257145 Brachypodium distachyon
Bradi1g34537 2.0kb downstream 2.0kb downstream 7051 true Bd1: 30257146-30264196 Brachypodium distachyon
Bradi1g34537 2.0kb downstream 2.0kb downstream 2000 false Bd1: 30262197-30264196 Brachypodium distachyon
Bradi1g34537 5.0kb upstream 5.0kb upstream 10051 true Bd1: 30252146-30262196 Brachypodium distachyon
Bradi1g34537 5.0kb upstream 5.0kb upstream 5000 false Bd1: 30252146-30257145 Brachypodium distachyon
Bradi1g34537 5.0kb downstream 5.0kb downstream 10051 true Bd1: 30257146-30267196 Brachypodium distachyon
Bradi1g34537 5.0kb downstream 5.0kb downstream 5000 false Bd1: 30262197-30267196 Brachypodium distachyon
Bradi1g34537 10.0kb upstream 10.0kb upstream 15051 true Bd1: 30247146-30262196 Brachypodium distachyon
Bradi1g34537 10.0kb upstream 10.0kb upstream 10000 false Bd1: 30247146-30257145 Brachypodium distachyon
Bradi1g34537 10.0kb downstream 10.0kb downstream 15051 true Bd1: 30257146-30272196 Brachypodium distachyon
Bradi1g34537 10.0kb downstream 10.0kb downstream 10000 false Bd1: 30262197-30272196 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575975 5269 Grass View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.295        
cufflinks 3.434        
cufflinks 4.484       High
cufflinks 3.679        
cufflinks 2.068        
cufflinks 2.963        
cufflinks 3.224        
cufflinks 3.148        
cufflinks 3.153        
cufflinks 3.172        
cufflinks 2.605        
cufflinks 2.755        
cufflinks 1.691       Low
cufflinks 1.976        
cufflinks 1.871       Low
cufflinks 3.018        
cufflinks 2.883        
cufflinks 4.667       High
cufflinks 2.279        
cufflinks 1.4       Low
cufflinks 3.403        
cufflinks 3.842        
cufflinks 2.919        
cufflinks 2.283        
cufflinks 3.015        
cufflinks 4.25       High
cufflinks 2.26        
cufflinks 4.39       High
cufflinks 4.244       High
cufflinks 3.276        

0 Strain