Gene : Bradi5g20710 B. distachyon v3.1
Defline:  (1 of 2) K03016 - DNA-directed RNA polymerases I, II, and III subunit RPABC3 (RPB8, POLR2H) Genomic Order:  2404
Name:  ? Bradi5g20710 Secondary Identifier:  ? PAC:32810844
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g20710 0.5kb upstream 0.5kb upstream 3286 true Bd5: 23650839-23654124 Brachypodium distachyon
Bradi5g20710 0.5kb upstream 0.5kb upstream 500 false Bd5: 23653625-23654124 Brachypodium distachyon
Bradi5g20710 0.5kb downstream 0.5kb downstream 3286 true Bd5: 23650339-23653624 Brachypodium distachyon
Bradi5g20710 0.5kb downstream 0.5kb downstream 500 false Bd5: 23650339-23650838 Brachypodium distachyon
Bradi5g20710 1.0kb upstream 1.0kb upstream 3786 true Bd5: 23650839-23654624 Brachypodium distachyon
Bradi5g20710 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23653625-23654624 Brachypodium distachyon
Bradi5g20710 1.0kb downstream 1.0kb downstream 3786 true Bd5: 23649839-23653624 Brachypodium distachyon
Bradi5g20710 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23649839-23650838 Brachypodium distachyon
Bradi5g20710 2.0kb upstream 2.0kb upstream 4786 true Bd5: 23650839-23655624 Brachypodium distachyon
Bradi5g20710 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23653625-23655624 Brachypodium distachyon
Bradi5g20710 2.0kb downstream 2.0kb downstream 4786 true Bd5: 23648839-23653624 Brachypodium distachyon
Bradi5g20710 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23648839-23650838 Brachypodium distachyon
Bradi5g20710 5.0kb upstream 5.0kb upstream 7786 true Bd5: 23650839-23658624 Brachypodium distachyon
Bradi5g20710 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23653625-23658624 Brachypodium distachyon
Bradi5g20710 5.0kb downstream 5.0kb downstream 7786 true Bd5: 23645839-23653624 Brachypodium distachyon
Bradi5g20710 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23645839-23650838 Brachypodium distachyon
Bradi5g20710 10.0kb upstream 10.0kb upstream 12786 true Bd5: 23650839-23663624 Brachypodium distachyon
Bradi5g20710 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23653625-23663624 Brachypodium distachyon
Bradi5g20710 10.0kb downstream 10.0kb downstream 12786 true Bd5: 23640839-23653624 Brachypodium distachyon
Bradi5g20710 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23640839-23650838 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572800 5269 Grass View MSA
122051264 5273 Angiosperm View MSA
121346486 5274 Embryophyte View MSA
123424696 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.089        
cufflinks 0.093     Low  
cufflinks 0.1        
cufflinks 0.113        
cufflinks 0.102        
cufflinks 0.11        
cufflinks 0.083     Low  
cufflinks 0.099        
cufflinks 0.086     Low  
cufflinks 0.083     Low  
cufflinks 0.062     Low Low
cufflinks 0.077     Low  
cufflinks 0.077        
cufflinks 0.088        
cufflinks 0.076        
cufflinks 0.079     Low  
cufflinks 0.07     Low  
cufflinks 0.186       High
cufflinks 0.078     Low  
cufflinks 0.192       High
cufflinks 0.113        
cufflinks 0.077     Low  
cufflinks 0.074     Low  
cufflinks 0.06     Low Low
cufflinks 0.07     Low  
cufflinks 0.088     Low  
cufflinks 0.089     Low  
cufflinks 0.09     Low  
cufflinks 0.046     Low Low
cufflinks 0.109     Low  

0 Strain