Gene : Bradi5g20520 B. distachyon v3.1
Defline:  (1 of 2) PTHR31499:SF5 - HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN Genomic Order:  2386
Name:  ? Bradi5g20520 Secondary Identifier:  ? PAC:32807742
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g20520 0.5kb upstream 0.5kb upstream 3577 true Bd5: 23549624-23553200 Brachypodium distachyon
Bradi5g20520 0.5kb upstream 0.5kb upstream 500 false Bd5: 23549624-23550123 Brachypodium distachyon
Bradi5g20520 0.5kb downstream 0.5kb downstream 3577 true Bd5: 23550124-23553700 Brachypodium distachyon
Bradi5g20520 0.5kb downstream 0.5kb downstream 500 false Bd5: 23553201-23553700 Brachypodium distachyon
Bradi5g20520 1.0kb upstream 1.0kb upstream 4077 true Bd5: 23549124-23553200 Brachypodium distachyon
Bradi5g20520 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23549124-23550123 Brachypodium distachyon
Bradi5g20520 1.0kb downstream 1.0kb downstream 4077 true Bd5: 23550124-23554200 Brachypodium distachyon
Bradi5g20520 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23553201-23554200 Brachypodium distachyon
Bradi5g20520 2.0kb upstream 2.0kb upstream 5077 true Bd5: 23548124-23553200 Brachypodium distachyon
Bradi5g20520 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23548124-23550123 Brachypodium distachyon
Bradi5g20520 2.0kb downstream 2.0kb downstream 5077 true Bd5: 23550124-23555200 Brachypodium distachyon
Bradi5g20520 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23553201-23555200 Brachypodium distachyon
Bradi5g20520 5.0kb upstream 5.0kb upstream 8077 true Bd5: 23545124-23553200 Brachypodium distachyon
Bradi5g20520 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23545124-23550123 Brachypodium distachyon
Bradi5g20520 5.0kb downstream 5.0kb downstream 8077 true Bd5: 23550124-23558200 Brachypodium distachyon
Bradi5g20520 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23553201-23558200 Brachypodium distachyon
Bradi5g20520 10.0kb upstream 10.0kb upstream 13077 true Bd5: 23540124-23553200 Brachypodium distachyon
Bradi5g20520 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23540124-23550123 Brachypodium distachyon
Bradi5g20520 10.0kb downstream 10.0kb downstream 13077 true Bd5: 23550124-23563200 Brachypodium distachyon
Bradi5g20520 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23553201-23563200 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581169 5269 Grass View MSA
122042666 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121349639 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.515       High
cufflinks 0.082     Low Low
cufflinks 0.041     Low Low
cufflinks 0.182        
cufflinks 0.146        
cufflinks 0.124        
cufflinks 0.088        
cufflinks 0.214        
cufflinks 0.164        
cufflinks 0.078     Low Low
cufflinks 0.373       High
cufflinks 0.18        
cufflinks 0.169        
cufflinks 0.245        
cufflinks 0.248        
cufflinks 0.085     Low  
cufflinks 0.389       High
cufflinks 0.288        
cufflinks 0.166     Low  
cufflinks 0.811       High
cufflinks 0.2        
cufflinks 0.047     Low Low
cufflinks 0.187        
cufflinks 0.319        
cufflinks 0.141        
cufflinks 0.06     Low Low
cufflinks 0.21        
cufflinks 0.06     Low Low
cufflinks 0.043     Low Low
cufflinks 0.115     Low  

0 Strain