Gene : Bradi1g30430 B. distachyon v3.1
Defline:  (1 of 1) K12197 - charged multivesicular body protein 1 (CHMP1, VPS46, DID2) Genomic Order:  3856
Name:  ? Bradi1g30430 Secondary Identifier:  ? PAC:32803852
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g30430 0.5kb upstream 0.5kb upstream 3363 true Bd1: 25817743-25821105 Brachypodium distachyon
Bradi1g30430 0.5kb upstream 0.5kb upstream 500 false Bd1: 25820606-25821105 Brachypodium distachyon
Bradi1g30430 0.5kb downstream 0.5kb downstream 3363 true Bd1: 25817243-25820605 Brachypodium distachyon
Bradi1g30430 0.5kb downstream 0.5kb downstream 500 false Bd1: 25817243-25817742 Brachypodium distachyon
Bradi1g30430 1.0kb upstream 1.0kb upstream 3863 true Bd1: 25817743-25821605 Brachypodium distachyon
Bradi1g30430 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25820606-25821605 Brachypodium distachyon
Bradi1g30430 1.0kb downstream 1.0kb downstream 3863 true Bd1: 25816743-25820605 Brachypodium distachyon
Bradi1g30430 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25816743-25817742 Brachypodium distachyon
Bradi1g30430 2.0kb upstream 2.0kb upstream 4863 true Bd1: 25817743-25822605 Brachypodium distachyon
Bradi1g30430 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25820606-25822605 Brachypodium distachyon
Bradi1g30430 2.0kb downstream 2.0kb downstream 4863 true Bd1: 25815743-25820605 Brachypodium distachyon
Bradi1g30430 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25815743-25817742 Brachypodium distachyon
Bradi1g30430 5.0kb upstream 5.0kb upstream 7863 true Bd1: 25817743-25825605 Brachypodium distachyon
Bradi1g30430 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25820606-25825605 Brachypodium distachyon
Bradi1g30430 5.0kb downstream 5.0kb downstream 7863 true Bd1: 25812743-25820605 Brachypodium distachyon
Bradi1g30430 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25812743-25817742 Brachypodium distachyon
Bradi1g30430 10.0kb upstream 10.0kb upstream 12863 true Bd1: 25817743-25830605 Brachypodium distachyon
Bradi1g30430 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25820606-25830605 Brachypodium distachyon
Bradi1g30430 10.0kb downstream 10.0kb downstream 12863 true Bd1: 25807743-25820605 Brachypodium distachyon
Bradi1g30430 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25807743-25817742 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580492 5269 Grass View MSA
122044262 5273 Angiosperm View MSA
121349635 5274 Embryophyte View MSA
123427092 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.291     High  
cufflinks 19.282     High  
cufflinks 19.349     High  
cufflinks 22.921     High  
cufflinks 56.298     High High
cufflinks 19.643     High  
cufflinks 21.414     High  
cufflinks 20.447     High  
cufflinks 20.927     High  
cufflinks 21.31     High  
cufflinks 33.155     High  
cufflinks 23.643     High  
cufflinks 23.568     High  
cufflinks 28.321     High  
cufflinks 43.918     High  
cufflinks 19.099     High  
cufflinks 27.605     High  
cufflinks 22.93     High  
cufflinks 45.043     High High
cufflinks 115.039     High High
cufflinks 39.302     High  
cufflinks 16.44     High Low
cufflinks 21.898     High  
cufflinks 21.928     High  
cufflinks 24.409     High  
cufflinks 18.551     High  
cufflinks 20.984     High  
cufflinks 23.555     High  
cufflinks 17.958     High Low
cufflinks 31.41     High  

0 Strain