Gene : Bradi1g30540 B. distachyon v3.1
Defline:  (1 of 1) KOG3306 - Predicted membrane protein Genomic Order:  3869
Name:  ? Bradi1g30540 Secondary Identifier:  ? PAC:32797356
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g30540 0.5kb upstream 0.5kb upstream 3508 true Bd1: 25899005-25902512 Brachypodium distachyon
Bradi1g30540 0.5kb upstream 0.5kb upstream 500 false Bd1: 25899005-25899504 Brachypodium distachyon
Bradi1g30540 0.5kb downstream 0.5kb downstream 3508 true Bd1: 25899505-25903012 Brachypodium distachyon
Bradi1g30540 0.5kb downstream 0.5kb downstream 500 false Bd1: 25902513-25903012 Brachypodium distachyon
Bradi1g30540 1.0kb upstream 1.0kb upstream 4008 true Bd1: 25898505-25902512 Brachypodium distachyon
Bradi1g30540 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25898505-25899504 Brachypodium distachyon
Bradi1g30540 1.0kb downstream 1.0kb downstream 4008 true Bd1: 25899505-25903512 Brachypodium distachyon
Bradi1g30540 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25902513-25903512 Brachypodium distachyon
Bradi1g30540 2.0kb upstream 2.0kb upstream 5008 true Bd1: 25897505-25902512 Brachypodium distachyon
Bradi1g30540 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25897505-25899504 Brachypodium distachyon
Bradi1g30540 2.0kb downstream 2.0kb downstream 5008 true Bd1: 25899505-25904512 Brachypodium distachyon
Bradi1g30540 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25902513-25904512 Brachypodium distachyon
Bradi1g30540 5.0kb upstream 5.0kb upstream 8008 true Bd1: 25894505-25902512 Brachypodium distachyon
Bradi1g30540 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25894505-25899504 Brachypodium distachyon
Bradi1g30540 5.0kb downstream 5.0kb downstream 8008 true Bd1: 25899505-25907512 Brachypodium distachyon
Bradi1g30540 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25902513-25907512 Brachypodium distachyon
Bradi1g30540 10.0kb upstream 10.0kb upstream 13008 true Bd1: 25889505-25902512 Brachypodium distachyon
Bradi1g30540 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25889505-25899504 Brachypodium distachyon
Bradi1g30540 10.0kb downstream 10.0kb downstream 13008 true Bd1: 25899505-25912512 Brachypodium distachyon
Bradi1g30540 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25902513-25912512 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570092 5269 Grass View MSA
122047015 5273 Angiosperm View MSA
121345754 5274 Embryophyte View MSA
123424414 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.377     High  
cufflinks 16.062     High  
cufflinks 18.044     High  
cufflinks 20.892     High  
cufflinks 14.709     High  
cufflinks 14.761     High  
cufflinks 14.987     High  
cufflinks 15.924     High  
cufflinks 14.876     High  
cufflinks 29.563     High High
cufflinks 14.915     High  
cufflinks 13.478     High Low
cufflinks 15.68     High  
cufflinks 15.062     High  
cufflinks 15.185     High  
cufflinks 14.98     High  
cufflinks 26.373     High  
cufflinks 24.436     High  
cufflinks 32.198     High High
cufflinks 26.787     High High
cufflinks 37.066     High High
cufflinks 17.676     High  
cufflinks 16.378     High  
cufflinks 17.485     High  
cufflinks 20.011     High  
cufflinks 27.156     High High
cufflinks 21.592     High  
cufflinks 25.308     High  
cufflinks 21.014     High  
cufflinks 21.982     High  

0 Strain