Gene : Bradi1g30580 B. distachyon v3.1
Defline:  (1 of 1) K14554 - U3 small nucleolar RNA-associated protein 21 (UTP21, WDR36) Genomic Order:  3873
Name:  ? Bradi1g30580 Secondary Identifier:  ? PAC:32795457
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g30580 0.5kb upstream 0.5kb upstream 9549 true Bd1: 25927933-25937481 Brachypodium distachyon
Bradi1g30580 0.5kb upstream 0.5kb upstream 500 false Bd1: 25927933-25928432 Brachypodium distachyon
Bradi1g30580 0.5kb downstream 0.5kb downstream 9549 true Bd1: 25928433-25937981 Brachypodium distachyon
Bradi1g30580 0.5kb downstream 0.5kb downstream 500 false Bd1: 25937482-25937981 Brachypodium distachyon
Bradi1g30580 1.0kb upstream 1.0kb upstream 10049 true Bd1: 25927433-25937481 Brachypodium distachyon
Bradi1g30580 1.0kb upstream 1.0kb upstream 1000 false Bd1: 25927433-25928432 Brachypodium distachyon
Bradi1g30580 1.0kb downstream 1.0kb downstream 10049 true Bd1: 25928433-25938481 Brachypodium distachyon
Bradi1g30580 1.0kb downstream 1.0kb downstream 1000 false Bd1: 25937482-25938481 Brachypodium distachyon
Bradi1g30580 2.0kb upstream 2.0kb upstream 11049 true Bd1: 25926433-25937481 Brachypodium distachyon
Bradi1g30580 2.0kb upstream 2.0kb upstream 2000 false Bd1: 25926433-25928432 Brachypodium distachyon
Bradi1g30580 2.0kb downstream 2.0kb downstream 11049 true Bd1: 25928433-25939481 Brachypodium distachyon
Bradi1g30580 2.0kb downstream 2.0kb downstream 2000 false Bd1: 25937482-25939481 Brachypodium distachyon
Bradi1g30580 5.0kb upstream 5.0kb upstream 14049 true Bd1: 25923433-25937481 Brachypodium distachyon
Bradi1g30580 5.0kb upstream 5.0kb upstream 5000 false Bd1: 25923433-25928432 Brachypodium distachyon
Bradi1g30580 5.0kb downstream 5.0kb downstream 14049 true Bd1: 25928433-25942481 Brachypodium distachyon
Bradi1g30580 5.0kb downstream 5.0kb downstream 5000 false Bd1: 25937482-25942481 Brachypodium distachyon
Bradi1g30580 10.0kb upstream 10.0kb upstream 19049 true Bd1: 25918433-25937481 Brachypodium distachyon
Bradi1g30580 10.0kb upstream 10.0kb upstream 10000 false Bd1: 25918433-25928432 Brachypodium distachyon
Bradi1g30580 10.0kb downstream 10.0kb downstream 19049 true Bd1: 25928433-25947481 Brachypodium distachyon
Bradi1g30580 10.0kb downstream 10.0kb downstream 10000 false Bd1: 25937482-25947481 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577339 5269 Grass View MSA
122041805 5273 Angiosperm View MSA
121346831 5274 Embryophyte View MSA
123424252 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.708        
cufflinks 7.067       High
cufflinks 5.133        
cufflinks 6.385       High
cufflinks 0.995       Low
cufflinks 5.51        
cufflinks 5.49        
cufflinks 3.961        
cufflinks 4.696        
cufflinks 2.5        
cufflinks 3.185        
cufflinks 3.822        
cufflinks 1.544        
cufflinks 2.106        
cufflinks 1.505        
cufflinks 5.871        
cufflinks 2.119        
cufflinks 7.614       High
cufflinks 1.362       Low
cufflinks 0.886       Low
cufflinks 2.314        
cufflinks 3.394        
cufflinks 3.401        
cufflinks 3.866        
cufflinks 5.841        
cufflinks 3.366        
cufflinks 1.914        
cufflinks 2.466        
cufflinks 2.663        
cufflinks 4.59        

0 Strain