Gene : Bradi1g31370 B. distachyon v3.1
Defline:  (1 of 6) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) Genomic Order:  3977
Name:  ? Bradi1g31370 Secondary Identifier:  ? PAC:32796777
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g31370 0.5kb upstream 0.5kb upstream 3636 true Bd1: 26942698-26946333 Brachypodium distachyon
Bradi1g31370 0.5kb upstream 0.5kb upstream 500 false Bd1: 26942698-26943197 Brachypodium distachyon
Bradi1g31370 0.5kb downstream 0.5kb downstream 3636 true Bd1: 26943198-26946833 Brachypodium distachyon
Bradi1g31370 0.5kb downstream 0.5kb downstream 500 false Bd1: 26946334-26946833 Brachypodium distachyon
Bradi1g31370 1.0kb upstream 1.0kb upstream 4136 true Bd1: 26942198-26946333 Brachypodium distachyon
Bradi1g31370 1.0kb upstream 1.0kb upstream 1000 false Bd1: 26942198-26943197 Brachypodium distachyon
Bradi1g31370 1.0kb downstream 1.0kb downstream 4136 true Bd1: 26943198-26947333 Brachypodium distachyon
Bradi1g31370 1.0kb downstream 1.0kb downstream 1000 false Bd1: 26946334-26947333 Brachypodium distachyon
Bradi1g31370 2.0kb upstream 2.0kb upstream 5136 true Bd1: 26941198-26946333 Brachypodium distachyon
Bradi1g31370 2.0kb upstream 2.0kb upstream 2000 false Bd1: 26941198-26943197 Brachypodium distachyon
Bradi1g31370 2.0kb downstream 2.0kb downstream 5136 true Bd1: 26943198-26948333 Brachypodium distachyon
Bradi1g31370 2.0kb downstream 2.0kb downstream 2000 false Bd1: 26946334-26948333 Brachypodium distachyon
Bradi1g31370 5.0kb upstream 5.0kb upstream 8136 true Bd1: 26938198-26946333 Brachypodium distachyon
Bradi1g31370 5.0kb upstream 5.0kb upstream 5000 false Bd1: 26938198-26943197 Brachypodium distachyon
Bradi1g31370 5.0kb downstream 5.0kb downstream 8136 true Bd1: 26943198-26951333 Brachypodium distachyon
Bradi1g31370 5.0kb downstream 5.0kb downstream 5000 false Bd1: 26946334-26951333 Brachypodium distachyon
Bradi1g31370 10.0kb upstream 10.0kb upstream 13136 true Bd1: 26933198-26946333 Brachypodium distachyon
Bradi1g31370 10.0kb upstream 10.0kb upstream 10000 false Bd1: 26933198-26943197 Brachypodium distachyon
Bradi1g31370 10.0kb downstream 10.0kb downstream 13136 true Bd1: 26943198-26956333 Brachypodium distachyon
Bradi1g31370 10.0kb downstream 10.0kb downstream 10000 false Bd1: 26946334-26956333 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578933 5269 Grass View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.875        
cufflinks 18.953     High High
cufflinks 17.788     High High
cufflinks 13.761     High  
cufflinks 1.659       Low
cufflinks 15.42     High  
cufflinks 16.935     High High
cufflinks 8.978        
cufflinks 12.636     High  
cufflinks 6.359        
cufflinks 4.668        
cufflinks 14.385     High  
cufflinks 7.333     High  
cufflinks 5.831        
cufflinks 6.424        
cufflinks 12.889     High  
cufflinks 6.599        
cufflinks 2.71       Low
cufflinks 6.838        
cufflinks 0.785       Low
cufflinks 8.837        
cufflinks 9.853        
cufflinks 9.276     High  
cufflinks 13.149     High  
cufflinks 14.651     High  
cufflinks 15.805     High  
cufflinks 11.563     High  
cufflinks 15.026     High  
cufflinks 13.067     High  
cufflinks 12.298     High  

0 Strain