Gene : Bradi1g31417 B. distachyon v3.1
Defline:  (1 of 2) PTHR11977//PTHR11977:SF47 - VILLIN Genomic Order:  3983
Name:  ? Bradi1g31417 Secondary Identifier:  ? PAC:32796468
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g31417 0.5kb upstream 0.5kb upstream 11012 true Bd1: 26996698-27007709 Brachypodium distachyon
Bradi1g31417 0.5kb upstream 0.5kb upstream 500 false Bd1: 27007210-27007709 Brachypodium distachyon
Bradi1g31417 0.5kb downstream 0.5kb downstream 11012 true Bd1: 26996198-27007209 Brachypodium distachyon
Bradi1g31417 0.5kb downstream 0.5kb downstream 500 false Bd1: 26996198-26996697 Brachypodium distachyon
Bradi1g31417 1.0kb upstream 1.0kb upstream 11512 true Bd1: 26996698-27008209 Brachypodium distachyon
Bradi1g31417 1.0kb upstream 1.0kb upstream 1000 false Bd1: 27007210-27008209 Brachypodium distachyon
Bradi1g31417 1.0kb downstream 1.0kb downstream 11512 true Bd1: 26995698-27007209 Brachypodium distachyon
Bradi1g31417 1.0kb downstream 1.0kb downstream 1000 false Bd1: 26995698-26996697 Brachypodium distachyon
Bradi1g31417 2.0kb upstream 2.0kb upstream 12512 true Bd1: 26996698-27009209 Brachypodium distachyon
Bradi1g31417 2.0kb upstream 2.0kb upstream 2000 false Bd1: 27007210-27009209 Brachypodium distachyon
Bradi1g31417 2.0kb downstream 2.0kb downstream 12512 true Bd1: 26994698-27007209 Brachypodium distachyon
Bradi1g31417 2.0kb downstream 2.0kb downstream 2000 false Bd1: 26994698-26996697 Brachypodium distachyon
Bradi1g31417 5.0kb upstream 5.0kb upstream 15512 true Bd1: 26996698-27012209 Brachypodium distachyon
Bradi1g31417 5.0kb upstream 5.0kb upstream 5000 false Bd1: 27007210-27012209 Brachypodium distachyon
Bradi1g31417 5.0kb downstream 5.0kb downstream 15512 true Bd1: 26991698-27007209 Brachypodium distachyon
Bradi1g31417 5.0kb downstream 5.0kb downstream 5000 false Bd1: 26991698-26996697 Brachypodium distachyon
Bradi1g31417 10.0kb upstream 10.0kb upstream 20512 true Bd1: 26996698-27017209 Brachypodium distachyon
Bradi1g31417 10.0kb upstream 10.0kb upstream 10000 false Bd1: 27007210-27017209 Brachypodium distachyon
Bradi1g31417 10.0kb downstream 10.0kb downstream 20512 true Bd1: 26986698-27007209 Brachypodium distachyon
Bradi1g31417 10.0kb downstream 10.0kb downstream 10000 false Bd1: 26986698-26996697 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576504 5269 Grass View MSA
122050203 5273 Angiosperm View MSA
121349269 5274 Embryophyte View MSA
123428280 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.675        
cufflinks 1.053        
cufflinks 1.097        
cufflinks 0.921        
cufflinks 0.513        
cufflinks 0.999        
cufflinks 0.85        
cufflinks 0.832        
cufflinks 1.004        
cufflinks 0.443        
cufflinks 0.256       Low
cufflinks 1.089        
cufflinks 0.322       Low
cufflinks 0.15       Low
cufflinks 0.519        
cufflinks 1.055        
cufflinks 0.667        
cufflinks 3.119       High
cufflinks 0.807        
cufflinks 0.227       Low
cufflinks 1.133        
cufflinks 1.085        
cufflinks 0.867        
cufflinks 0.921        
cufflinks 0.809        
cufflinks 0.867        
cufflinks 0.238       Low
cufflinks 0.664        
cufflinks 0.798        
cufflinks 1.733       High

0 Strain