Gene : Bradi1g32087 B. distachyon v3.1
Defline:  (1 of 2) PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE Genomic Order:  4068
Name:  ? Bradi1g32087 Secondary Identifier:  ? PAC:32804119
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon ANAGLYCOLYSIS-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-1042 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon SUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g32087 0.5kb upstream 0.5kb upstream 6580 true Bd1: 27541757-27548336 Brachypodium distachyon
Bradi1g32087 0.5kb upstream 0.5kb upstream 500 false Bd1: 27547837-27548336 Brachypodium distachyon
Bradi1g32087 0.5kb downstream 0.5kb downstream 6580 true Bd1: 27541257-27547836 Brachypodium distachyon
Bradi1g32087 0.5kb downstream 0.5kb downstream 500 false Bd1: 27541257-27541756 Brachypodium distachyon
Bradi1g32087 1.0kb upstream 1.0kb upstream 7080 true Bd1: 27541757-27548836 Brachypodium distachyon
Bradi1g32087 1.0kb upstream 1.0kb upstream 1000 false Bd1: 27547837-27548836 Brachypodium distachyon
Bradi1g32087 1.0kb downstream 1.0kb downstream 7080 true Bd1: 27540757-27547836 Brachypodium distachyon
Bradi1g32087 1.0kb downstream 1.0kb downstream 1000 false Bd1: 27540757-27541756 Brachypodium distachyon
Bradi1g32087 2.0kb upstream 2.0kb upstream 8080 true Bd1: 27541757-27549836 Brachypodium distachyon
Bradi1g32087 2.0kb upstream 2.0kb upstream 2000 false Bd1: 27547837-27549836 Brachypodium distachyon
Bradi1g32087 2.0kb downstream 2.0kb downstream 8080 true Bd1: 27539757-27547836 Brachypodium distachyon
Bradi1g32087 2.0kb downstream 2.0kb downstream 2000 false Bd1: 27539757-27541756 Brachypodium distachyon
Bradi1g32087 5.0kb upstream 5.0kb upstream 11080 true Bd1: 27541757-27552836 Brachypodium distachyon
Bradi1g32087 5.0kb upstream 5.0kb upstream 5000 false Bd1: 27547837-27552836 Brachypodium distachyon
Bradi1g32087 5.0kb downstream 5.0kb downstream 11080 true Bd1: 27536757-27547836 Brachypodium distachyon
Bradi1g32087 5.0kb downstream 5.0kb downstream 5000 false Bd1: 27536757-27541756 Brachypodium distachyon
Bradi1g32087 10.0kb upstream 10.0kb upstream 16080 true Bd1: 27541757-27557836 Brachypodium distachyon
Bradi1g32087 10.0kb upstream 10.0kb upstream 10000 false Bd1: 27547837-27557836 Brachypodium distachyon
Bradi1g32087 10.0kb downstream 10.0kb downstream 16080 true Bd1: 27531757-27547836 Brachypodium distachyon
Bradi1g32087 10.0kb downstream 10.0kb downstream 10000 false Bd1: 27531757-27541756 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124567933 5269 Grass View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.39        
cufflinks 5.55        
cufflinks 5.381        
cufflinks 5.917        
cufflinks 5.672        
cufflinks 5.501        
cufflinks 5.551        
cufflinks 4.692        
cufflinks 5.008        
cufflinks 5.524        
cufflinks 2.771       Low
cufflinks 4.933        
cufflinks 3.593       Low
cufflinks 2.428       Low
cufflinks 4.164        
cufflinks 5.98        
cufflinks 6.411        
cufflinks 14.038     High High
cufflinks 5.725        
cufflinks 2.11       Low
cufflinks 10.772       High
cufflinks 5.732        
cufflinks 4.758        
cufflinks 5.023        
cufflinks 6.199        
cufflinks 5.604        
cufflinks 6.061        
cufflinks 5.381        
cufflinks 4.865        
cufflinks 8.14       High

0 Strain