Gene : Bradi1g32200 B. distachyon v3.1
Defline:  (1 of 6) K08066 - nuclear transcription factor Y, gamma (NFYC) Genomic Order:  4080
Name:  ? Bradi1g32200 Secondary Identifier:  ? PAC:32802698
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g32200 0.5kb upstream 0.5kb upstream 4410 true Bd1: 27623845-27628254 Brachypodium distachyon
Bradi1g32200 0.5kb upstream 0.5kb upstream 500 false Bd1: 27623845-27624344 Brachypodium distachyon
Bradi1g32200 0.5kb downstream 0.5kb downstream 4410 true Bd1: 27624345-27628754 Brachypodium distachyon
Bradi1g32200 0.5kb downstream 0.5kb downstream 500 false Bd1: 27628255-27628754 Brachypodium distachyon
Bradi1g32200 1.0kb upstream 1.0kb upstream 4910 true Bd1: 27623345-27628254 Brachypodium distachyon
Bradi1g32200 1.0kb upstream 1.0kb upstream 1000 false Bd1: 27623345-27624344 Brachypodium distachyon
Bradi1g32200 1.0kb downstream 1.0kb downstream 4910 true Bd1: 27624345-27629254 Brachypodium distachyon
Bradi1g32200 1.0kb downstream 1.0kb downstream 1000 false Bd1: 27628255-27629254 Brachypodium distachyon
Bradi1g32200 2.0kb upstream 2.0kb upstream 5910 true Bd1: 27622345-27628254 Brachypodium distachyon
Bradi1g32200 2.0kb upstream 2.0kb upstream 2000 false Bd1: 27622345-27624344 Brachypodium distachyon
Bradi1g32200 2.0kb downstream 2.0kb downstream 5910 true Bd1: 27624345-27630254 Brachypodium distachyon
Bradi1g32200 2.0kb downstream 2.0kb downstream 2000 false Bd1: 27628255-27630254 Brachypodium distachyon
Bradi1g32200 5.0kb upstream 5.0kb upstream 8910 true Bd1: 27619345-27628254 Brachypodium distachyon
Bradi1g32200 5.0kb upstream 5.0kb upstream 5000 false Bd1: 27619345-27624344 Brachypodium distachyon
Bradi1g32200 5.0kb downstream 5.0kb downstream 8910 true Bd1: 27624345-27633254 Brachypodium distachyon
Bradi1g32200 5.0kb downstream 5.0kb downstream 5000 false Bd1: 27628255-27633254 Brachypodium distachyon
Bradi1g32200 10.0kb upstream 10.0kb upstream 13910 true Bd1: 27614345-27628254 Brachypodium distachyon
Bradi1g32200 10.0kb upstream 10.0kb upstream 10000 false Bd1: 27614345-27624344 Brachypodium distachyon
Bradi1g32200 10.0kb downstream 10.0kb downstream 13910 true Bd1: 27624345-27638254 Brachypodium distachyon
Bradi1g32200 10.0kb downstream 10.0kb downstream 10000 false Bd1: 27628255-27638254 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586022 5269 Grass View MSA
122049278 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121351220 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.344       Low
cufflinks 0.748        
cufflinks 0.893        
cufflinks 0.715        
cufflinks 0.877        
cufflinks 0.661        
cufflinks 0.679        
cufflinks 0.511        
cufflinks 0.639        
cufflinks 0.668        
cufflinks 0.754        
cufflinks 0.721        
cufflinks 0.315       Low
cufflinks 0.323       Low
cufflinks 0.438       Low
cufflinks 0.558        
cufflinks 0.72        
cufflinks 2.579       High
cufflinks 0.849        
cufflinks 1.698       High
cufflinks 0.969        
cufflinks 0.705        
cufflinks 0.628        
cufflinks 0.612        
cufflinks 0.796        
cufflinks 1.072        
cufflinks 0.853        
cufflinks 1.101        
cufflinks 0.975        
cufflinks 1.154        

0 Strain