Gene : Bradi5g25740 B. distachyon v3.1
Defline:  (1 of 1) PTHR10742:SF228 - POLYAMINE OXIDASE 4-RELATED Genomic Order:  3061
Name:  ? Bradi5g25740 Secondary Identifier:  ? PAC:32810924
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6441 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g25740 0.5kb upstream 0.5kb upstream 4740 true Bd5: 27098371-27103110 Brachypodium distachyon
Bradi5g25740 0.5kb upstream 0.5kb upstream 500 false Bd5: 27102611-27103110 Brachypodium distachyon
Bradi5g25740 0.5kb downstream 0.5kb downstream 4740 true Bd5: 27097871-27102610 Brachypodium distachyon
Bradi5g25740 0.5kb downstream 0.5kb downstream 500 false Bd5: 27097871-27098370 Brachypodium distachyon
Bradi5g25740 1.0kb upstream 1.0kb upstream 5240 true Bd5: 27098371-27103610 Brachypodium distachyon
Bradi5g25740 1.0kb upstream 1.0kb upstream 1000 false Bd5: 27102611-27103610 Brachypodium distachyon
Bradi5g25740 1.0kb downstream 1.0kb downstream 5240 true Bd5: 27097371-27102610 Brachypodium distachyon
Bradi5g25740 1.0kb downstream 1.0kb downstream 1000 false Bd5: 27097371-27098370 Brachypodium distachyon
Bradi5g25740 2.0kb upstream 2.0kb upstream 6240 true Bd5: 27098371-27104610 Brachypodium distachyon
Bradi5g25740 2.0kb upstream 2.0kb upstream 2000 false Bd5: 27102611-27104610 Brachypodium distachyon
Bradi5g25740 2.0kb downstream 2.0kb downstream 6240 true Bd5: 27096371-27102610 Brachypodium distachyon
Bradi5g25740 2.0kb downstream 2.0kb downstream 2000 false Bd5: 27096371-27098370 Brachypodium distachyon
Bradi5g25740 5.0kb upstream 5.0kb upstream 9240 true Bd5: 27098371-27107610 Brachypodium distachyon
Bradi5g25740 5.0kb upstream 5.0kb upstream 5000 false Bd5: 27102611-27107610 Brachypodium distachyon
Bradi5g25740 5.0kb downstream 5.0kb downstream 9240 true Bd5: 27093371-27102610 Brachypodium distachyon
Bradi5g25740 5.0kb downstream 5.0kb downstream 5000 false Bd5: 27093371-27098370 Brachypodium distachyon
Bradi5g25740 10.0kb upstream 10.0kb upstream 14240 true Bd5: 27098371-27112610 Brachypodium distachyon
Bradi5g25740 10.0kb upstream 10.0kb upstream 10000 false Bd5: 27102611-27112610 Brachypodium distachyon
Bradi5g25740 10.0kb downstream 10.0kb downstream 14240 true Bd5: 27088371-27102610 Brachypodium distachyon
Bradi5g25740 10.0kb downstream 10.0kb downstream 10000 false Bd5: 27088371-27098370 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571782 5269 Grass View MSA
122049478 5273 Angiosperm View MSA
121311425 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.18        
cufflinks 6.058        
cufflinks 2.149        
cufflinks 4.183        
cufflinks 0.822        
cufflinks 5.591        
cufflinks 5.828        
cufflinks 1.338        
cufflinks 2.776        
cufflinks 0.511        
cufflinks 0.079       Low
cufflinks 2.956        
cufflinks 0.112       Low
cufflinks 0.023     Low Low
cufflinks 0.99        
cufflinks 6.781        
cufflinks 3.01        
cufflinks 32.283     High High
cufflinks 1.211        
cufflinks 0.074     Low Low
cufflinks 6.666        
cufflinks 0.983        
cufflinks 1.508        
cufflinks 2.871        
cufflinks 4.935        
cufflinks 1.427        
cufflinks 0.123       Low
cufflinks 0.95        
cufflinks 0.74        
cufflinks 8.248       High

0 Strain