Gene : Bradi5g25730 B. distachyon v3.1
Defline:  (1 of 1) PTHR10742//PTHR10742:SF264 - AMINE OXIDASE Genomic Order:  3060
Name:  ? Bradi5g25730 Secondary Identifier:  ? PAC:32811526
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6441 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g25730 0.5kb upstream 0.5kb upstream 4253 true Bd5: 27093620-27097872 Brachypodium distachyon
Bradi5g25730 0.5kb upstream 0.5kb upstream 500 false Bd5: 27097373-27097872 Brachypodium distachyon
Bradi5g25730 0.5kb downstream 0.5kb downstream 4253 true Bd5: 27093120-27097372 Brachypodium distachyon
Bradi5g25730 0.5kb downstream 0.5kb downstream 500 false Bd5: 27093120-27093619 Brachypodium distachyon
Bradi5g25730 1.0kb upstream 1.0kb upstream 4753 true Bd5: 27093620-27098372 Brachypodium distachyon
Bradi5g25730 1.0kb upstream 1.0kb upstream 1000 false Bd5: 27097373-27098372 Brachypodium distachyon
Bradi5g25730 1.0kb downstream 1.0kb downstream 4753 true Bd5: 27092620-27097372 Brachypodium distachyon
Bradi5g25730 1.0kb downstream 1.0kb downstream 1000 false Bd5: 27092620-27093619 Brachypodium distachyon
Bradi5g25730 2.0kb upstream 2.0kb upstream 5753 true Bd5: 27093620-27099372 Brachypodium distachyon
Bradi5g25730 2.0kb upstream 2.0kb upstream 2000 false Bd5: 27097373-27099372 Brachypodium distachyon
Bradi5g25730 2.0kb downstream 2.0kb downstream 5753 true Bd5: 27091620-27097372 Brachypodium distachyon
Bradi5g25730 2.0kb downstream 2.0kb downstream 2000 false Bd5: 27091620-27093619 Brachypodium distachyon
Bradi5g25730 5.0kb upstream 5.0kb upstream 8753 true Bd5: 27093620-27102372 Brachypodium distachyon
Bradi5g25730 5.0kb upstream 5.0kb upstream 5000 false Bd5: 27097373-27102372 Brachypodium distachyon
Bradi5g25730 5.0kb downstream 5.0kb downstream 8753 true Bd5: 27088620-27097372 Brachypodium distachyon
Bradi5g25730 5.0kb downstream 5.0kb downstream 5000 false Bd5: 27088620-27093619 Brachypodium distachyon
Bradi5g25730 10.0kb upstream 10.0kb upstream 13753 true Bd5: 27093620-27107372 Brachypodium distachyon
Bradi5g25730 10.0kb upstream 10.0kb upstream 10000 false Bd5: 27097373-27107372 Brachypodium distachyon
Bradi5g25730 10.0kb downstream 10.0kb downstream 13753 true Bd5: 27083620-27097372 Brachypodium distachyon
Bradi5g25730 10.0kb downstream 10.0kb downstream 10000 false Bd5: 27083620-27093619 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588297 5269 Grass View MSA
122049478 5273 Angiosperm View MSA
121311425 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 100.872     High High
cufflinks 45.931     High High
cufflinks 4.619        
cufflinks 16.562     High  
cufflinks 11.806     High  
cufflinks 21.334     High  
cufflinks 41.071     High High
cufflinks 2.459       Low
cufflinks 8.05        
cufflinks 0.611       Low
cufflinks 11.752     High  
cufflinks 10.866     High  
cufflinks 6.659        
cufflinks 6.528        
cufflinks 6.827        
cufflinks 22.101     High  
cufflinks 4.558        
cufflinks 20.449     High  
cufflinks 20.229     High  
cufflinks 28.333     High  
cufflinks 12.565     High  
cufflinks 1.106       Low
cufflinks 2.276       Low
cufflinks 6.787        
cufflinks 16.71     High  
cufflinks 3.008        
cufflinks 18.178     High  
cufflinks 2.223       Low
cufflinks 1.218       Low
cufflinks 22.681     High  

0 Strain