Gene : Bradi5g25080 B. distachyon v3.1
Defline:  (1 of 1) PTHR22870//PTHR22870:SF195 - REGULATOR OF CHROMOSOME CONDENSATION // REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN Genomic Order:  2977
Name:  ? Bradi5g25080 Secondary Identifier:  ? PAC:32807339
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g25080 0.5kb upstream 0.5kb upstream 7512 true Bd5: 26704989-26712500 Brachypodium distachyon
Bradi5g25080 0.5kb upstream 0.5kb upstream 500 false Bd5: 26704989-26705488 Brachypodium distachyon
Bradi5g25080 0.5kb downstream 0.5kb downstream 7512 true Bd5: 26705489-26713000 Brachypodium distachyon
Bradi5g25080 0.5kb downstream 0.5kb downstream 500 false Bd5: 26712501-26713000 Brachypodium distachyon
Bradi5g25080 1.0kb upstream 1.0kb upstream 8012 true Bd5: 26704489-26712500 Brachypodium distachyon
Bradi5g25080 1.0kb upstream 1.0kb upstream 1000 false Bd5: 26704489-26705488 Brachypodium distachyon
Bradi5g25080 1.0kb downstream 1.0kb downstream 8012 true Bd5: 26705489-26713500 Brachypodium distachyon
Bradi5g25080 1.0kb downstream 1.0kb downstream 1000 false Bd5: 26712501-26713500 Brachypodium distachyon
Bradi5g25080 2.0kb upstream 2.0kb upstream 9012 true Bd5: 26703489-26712500 Brachypodium distachyon
Bradi5g25080 2.0kb upstream 2.0kb upstream 2000 false Bd5: 26703489-26705488 Brachypodium distachyon
Bradi5g25080 2.0kb downstream 2.0kb downstream 9012 true Bd5: 26705489-26714500 Brachypodium distachyon
Bradi5g25080 2.0kb downstream 2.0kb downstream 2000 false Bd5: 26712501-26714500 Brachypodium distachyon
Bradi5g25080 5.0kb upstream 5.0kb upstream 12012 true Bd5: 26700489-26712500 Brachypodium distachyon
Bradi5g25080 5.0kb upstream 5.0kb upstream 5000 false Bd5: 26700489-26705488 Brachypodium distachyon
Bradi5g25080 5.0kb downstream 5.0kb downstream 12012 true Bd5: 26705489-26717500 Brachypodium distachyon
Bradi5g25080 5.0kb downstream 5.0kb downstream 5000 false Bd5: 26712501-26717500 Brachypodium distachyon
Bradi5g25080 10.0kb upstream 10.0kb upstream 17012 true Bd5: 26695489-26712500 Brachypodium distachyon
Bradi5g25080 10.0kb upstream 10.0kb upstream 10000 false Bd5: 26695489-26705488 Brachypodium distachyon
Bradi5g25080 10.0kb downstream 10.0kb downstream 17012 true Bd5: 26705489-26722500 Brachypodium distachyon
Bradi5g25080 10.0kb downstream 10.0kb downstream 10000 false Bd5: 26712501-26722500 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588734 5269 Grass View MSA
122050415 5273 Angiosperm View MSA
121350788 5274 Embryophyte View MSA
123425107 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.666       High
cufflinks 3.937        
cufflinks 4.078        
cufflinks 3.65        
cufflinks 3.763        
cufflinks 4.007        
cufflinks 3.564        
cufflinks 3.359        
cufflinks 3.685        
cufflinks 3.707        
cufflinks 2.189       Low
cufflinks 3.568        
cufflinks 2.269       Low
cufflinks 1.997       Low
cufflinks 3.138        
cufflinks 3.929        
cufflinks 4.483        
cufflinks 5.299       High
cufflinks 2.969        
cufflinks 1.664       Low
cufflinks 2.634        
cufflinks 4.544        
cufflinks 3.29        
cufflinks 3.122        
cufflinks 3.734        
cufflinks 3.831        
cufflinks 2.463        
cufflinks 3.644        
cufflinks 3.802        
cufflinks 3.856        

0 Strain