Gene : Bradi5g24580 B. distachyon v3.1
Defline:  (1 of 1) PTHR13026 - NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52 Genomic Order:  2910
Name:  ? Bradi5g24580 Secondary Identifier:  ? PAC:32807316
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g24580 0.5kb upstream 0.5kb upstream 2496 true Bd5: 26355106-26357601 Brachypodium distachyon
Bradi5g24580 0.5kb upstream 0.5kb upstream 500 false Bd5: 26355106-26355605 Brachypodium distachyon
Bradi5g24580 0.5kb downstream 0.5kb downstream 2496 true Bd5: 26355606-26358101 Brachypodium distachyon
Bradi5g24580 0.5kb downstream 0.5kb downstream 500 false Bd5: 26357602-26358101 Brachypodium distachyon
Bradi5g24580 1.0kb upstream 1.0kb upstream 2996 true Bd5: 26354606-26357601 Brachypodium distachyon
Bradi5g24580 1.0kb upstream 1.0kb upstream 1000 false Bd5: 26354606-26355605 Brachypodium distachyon
Bradi5g24580 1.0kb downstream 1.0kb downstream 2996 true Bd5: 26355606-26358601 Brachypodium distachyon
Bradi5g24580 1.0kb downstream 1.0kb downstream 1000 false Bd5: 26357602-26358601 Brachypodium distachyon
Bradi5g24580 2.0kb upstream 2.0kb upstream 3996 true Bd5: 26353606-26357601 Brachypodium distachyon
Bradi5g24580 2.0kb upstream 2.0kb upstream 2000 false Bd5: 26353606-26355605 Brachypodium distachyon
Bradi5g24580 2.0kb downstream 2.0kb downstream 3996 true Bd5: 26355606-26359601 Brachypodium distachyon
Bradi5g24580 2.0kb downstream 2.0kb downstream 2000 false Bd5: 26357602-26359601 Brachypodium distachyon
Bradi5g24580 5.0kb upstream 5.0kb upstream 6996 true Bd5: 26350606-26357601 Brachypodium distachyon
Bradi5g24580 5.0kb upstream 5.0kb upstream 5000 false Bd5: 26350606-26355605 Brachypodium distachyon
Bradi5g24580 5.0kb downstream 5.0kb downstream 6996 true Bd5: 26355606-26362601 Brachypodium distachyon
Bradi5g24580 5.0kb downstream 5.0kb downstream 5000 false Bd5: 26357602-26362601 Brachypodium distachyon
Bradi5g24580 10.0kb upstream 10.0kb upstream 11996 true Bd5: 26345606-26357601 Brachypodium distachyon
Bradi5g24580 10.0kb upstream 10.0kb upstream 10000 false Bd5: 26345606-26355605 Brachypodium distachyon
Bradi5g24580 10.0kb downstream 10.0kb downstream 11996 true Bd5: 26355606-26367601 Brachypodium distachyon
Bradi5g24580 10.0kb downstream 10.0kb downstream 10000 false Bd5: 26357602-26367601 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041241 5273 Angiosperm View MSA
124572220 5269 Grass View MSA
121344172 5274 Embryophyte View MSA
123424078 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.428     High  
cufflinks 13.712     High  
cufflinks 16.422     High  
cufflinks 10.339        
cufflinks 9.022     High  
cufflinks 14.036     High  
cufflinks 13.96     High  
cufflinks 11.842     High  
cufflinks 12.661     High  
cufflinks 12.923     High  
cufflinks 8.137       Low
cufflinks 13.918     High  
cufflinks 7.316     High Low
cufflinks 6.51       Low
cufflinks 8.467        
cufflinks 16.129     High  
cufflinks 14.289     High  
cufflinks 29.372     High High
cufflinks 14.906     High  
cufflinks 4.913       Low
cufflinks 15.518     High  
cufflinks 17.36     High  
cufflinks 10.76     High  
cufflinks 10.833     High  
cufflinks 12.55     High  
cufflinks 14.695     High  
cufflinks 8.961     High  
cufflinks 15.453     High  
cufflinks 13.567     High  
cufflinks 22.493     High High

0 Strain