Gene : Bradi5g24397 B. distachyon v3.1
Defline:  (1 of 1) PTHR12668:SF5 - UPF0136 MEMBRANE PROTEIN YJR085C Genomic Order:  2888
Name:  ? Bradi5g24397 Secondary Identifier:  ? PAC:32810888
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g24397 0.5kb upstream 0.5kb upstream 5130 true Bd5: 26232567-26237696 Brachypodium distachyon
Bradi5g24397 0.5kb upstream 0.5kb upstream 500 false Bd5: 26232567-26233066 Brachypodium distachyon
Bradi5g24397 0.5kb downstream 0.5kb downstream 5130 true Bd5: 26233067-26238196 Brachypodium distachyon
Bradi5g24397 0.5kb downstream 0.5kb downstream 500 false Bd5: 26237697-26238196 Brachypodium distachyon
Bradi5g24397 1.0kb upstream 1.0kb upstream 5630 true Bd5: 26232067-26237696 Brachypodium distachyon
Bradi5g24397 1.0kb upstream 1.0kb upstream 1000 false Bd5: 26232067-26233066 Brachypodium distachyon
Bradi5g24397 1.0kb downstream 1.0kb downstream 5630 true Bd5: 26233067-26238696 Brachypodium distachyon
Bradi5g24397 1.0kb downstream 1.0kb downstream 1000 false Bd5: 26237697-26238696 Brachypodium distachyon
Bradi5g24397 2.0kb upstream 2.0kb upstream 6630 true Bd5: 26231067-26237696 Brachypodium distachyon
Bradi5g24397 2.0kb upstream 2.0kb upstream 2000 false Bd5: 26231067-26233066 Brachypodium distachyon
Bradi5g24397 2.0kb downstream 2.0kb downstream 6630 true Bd5: 26233067-26239696 Brachypodium distachyon
Bradi5g24397 2.0kb downstream 2.0kb downstream 2000 false Bd5: 26237697-26239696 Brachypodium distachyon
Bradi5g24397 5.0kb upstream 5.0kb upstream 9630 true Bd5: 26228067-26237696 Brachypodium distachyon
Bradi5g24397 5.0kb upstream 5.0kb upstream 5000 false Bd5: 26228067-26233066 Brachypodium distachyon
Bradi5g24397 5.0kb downstream 5.0kb downstream 9630 true Bd5: 26233067-26242696 Brachypodium distachyon
Bradi5g24397 5.0kb downstream 5.0kb downstream 5000 false Bd5: 26237697-26242696 Brachypodium distachyon
Bradi5g24397 10.0kb upstream 10.0kb upstream 14630 true Bd5: 26223067-26237696 Brachypodium distachyon
Bradi5g24397 10.0kb upstream 10.0kb upstream 10000 false Bd5: 26223067-26233066 Brachypodium distachyon
Bradi5g24397 10.0kb downstream 10.0kb downstream 14630 true Bd5: 26233067-26247696 Brachypodium distachyon
Bradi5g24397 10.0kb downstream 10.0kb downstream 10000 false Bd5: 26237697-26247696 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570225 5269 Grass View MSA
122047216 5273 Angiosperm View MSA
121351322 5274 Embryophyte View MSA
123426664 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.419     High  
cufflinks 10.678     High  
cufflinks 9.692        
cufflinks 11.892     High  
cufflinks 11.31     High  
cufflinks 9.115        
cufflinks 11.123     High  
cufflinks 8.093        
cufflinks 8.655        
cufflinks 14.098     High  
cufflinks 7.289       Low
cufflinks 9.086        
cufflinks 5.823       Low
cufflinks 7.204       Low
cufflinks 6.84       Low
cufflinks 10.01     High  
cufflinks 13.742     High  
cufflinks 14.321     High  
cufflinks 21.116     High High
cufflinks 8.494        
cufflinks 15.664     High High
cufflinks 8.5        
cufflinks 7.314       Low
cufflinks 7.717        
cufflinks 10.117     High  
cufflinks 13.847     High  
cufflinks 6.917       Low
cufflinks 13.451     High  
cufflinks 10.889     High  
cufflinks 13.877     High  

0 Strain