Gene : Bradi1g38687 B. distachyon v3.1
Defline:  (1 of 1) PTHR11558//PTHR11558:SF29 - SPERMIDINE/SPERMINE SYNTHASE Genomic Order:  4940
Name:  ? Bradi1g38687 Secondary Identifier:  ? PAC:32806048
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon BSUBPOLYAMSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon POLYAMINSYN3-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-7528 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g38687 0.5kb upstream 0.5kb upstream 9005 true Bd1: 35100858-35109862 Brachypodium distachyon
Bradi1g38687 0.5kb upstream 0.5kb upstream 500 false Bd1: 35100858-35101357 Brachypodium distachyon
Bradi1g38687 0.5kb downstream 0.5kb downstream 9005 true Bd1: 35101358-35110362 Brachypodium distachyon
Bradi1g38687 0.5kb downstream 0.5kb downstream 500 false Bd1: 35109863-35110362 Brachypodium distachyon
Bradi1g38687 1.0kb upstream 1.0kb upstream 9505 true Bd1: 35100358-35109862 Brachypodium distachyon
Bradi1g38687 1.0kb upstream 1.0kb upstream 1000 false Bd1: 35100358-35101357 Brachypodium distachyon
Bradi1g38687 1.0kb downstream 1.0kb downstream 9505 true Bd1: 35101358-35110862 Brachypodium distachyon
Bradi1g38687 1.0kb downstream 1.0kb downstream 1000 false Bd1: 35109863-35110862 Brachypodium distachyon
Bradi1g38687 2.0kb upstream 2.0kb upstream 10505 true Bd1: 35099358-35109862 Brachypodium distachyon
Bradi1g38687 2.0kb upstream 2.0kb upstream 2000 false Bd1: 35099358-35101357 Brachypodium distachyon
Bradi1g38687 2.0kb downstream 2.0kb downstream 10505 true Bd1: 35101358-35111862 Brachypodium distachyon
Bradi1g38687 2.0kb downstream 2.0kb downstream 2000 false Bd1: 35109863-35111862 Brachypodium distachyon
Bradi1g38687 5.0kb upstream 5.0kb upstream 13505 true Bd1: 35096358-35109862 Brachypodium distachyon
Bradi1g38687 5.0kb upstream 5.0kb upstream 5000 false Bd1: 35096358-35101357 Brachypodium distachyon
Bradi1g38687 5.0kb downstream 5.0kb downstream 13505 true Bd1: 35101358-35114862 Brachypodium distachyon
Bradi1g38687 5.0kb downstream 5.0kb downstream 5000 false Bd1: 35109863-35114862 Brachypodium distachyon
Bradi1g38687 10.0kb upstream 10.0kb upstream 18505 true Bd1: 35091358-35109862 Brachypodium distachyon
Bradi1g38687 10.0kb upstream 10.0kb upstream 10000 false Bd1: 35091358-35101357 Brachypodium distachyon
Bradi1g38687 10.0kb downstream 10.0kb downstream 18505 true Bd1: 35101358-35119862 Brachypodium distachyon
Bradi1g38687 10.0kb downstream 10.0kb downstream 10000 false Bd1: 35109863-35119862 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577208 5269 Grass View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.009     High  
cufflinks 11.477     High  
cufflinks 17.618     High  
cufflinks 12.937     High  
cufflinks 85.273     High High
cufflinks 18.082     High  
cufflinks 11.792     High  
cufflinks 49.713     High High
cufflinks 25.649     High  
cufflinks 43.773     High  
cufflinks 33.476     High  
cufflinks 27.085     High  
cufflinks 31.658     High  
cufflinks 31.413     High  
cufflinks 49.412     High High
cufflinks 17.677     High  
cufflinks 29.808     High  
cufflinks 2.063       Low
cufflinks 19.457     High  
cufflinks 48.027     High High
cufflinks 9.605       Low
cufflinks 46.432     High High
cufflinks 50.946     High High
cufflinks 29.115     High  
cufflinks 17.557     High  
cufflinks 26.3     High  
cufflinks 25.755     High  
cufflinks 28.75     High  
cufflinks 33.935     High  
cufflinks 9.273       Low

0 Strain