Gene : Bradi1g39206 B. distachyon v3.1
Defline:  (1 of 11) 4.1.1.39 - Ribulose-bisphosphate carboxylase / RuBP carboxylase Genomic Order:  5008
Name:  ? Bradi1g39206 Secondary Identifier:  ? PAC:32793076
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CALVIN-PWY Brachypodium distachyon pathologic  
Bdistachyon PHOTOALL-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5723 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g39206 0.5kb upstream 0.5kb upstream 6200 true Bd1: 35934823-35941022 Brachypodium distachyon
Bradi1g39206 0.5kb upstream 0.5kb upstream 500 false Bd1: 35934823-35935322 Brachypodium distachyon
Bradi1g39206 0.5kb downstream 0.5kb downstream 6200 true Bd1: 35935323-35941522 Brachypodium distachyon
Bradi1g39206 0.5kb downstream 0.5kb downstream 500 false Bd1: 35941023-35941522 Brachypodium distachyon
Bradi1g39206 1.0kb upstream 1.0kb upstream 6700 true Bd1: 35934323-35941022 Brachypodium distachyon
Bradi1g39206 1.0kb upstream 1.0kb upstream 1000 false Bd1: 35934323-35935322 Brachypodium distachyon
Bradi1g39206 1.0kb downstream 1.0kb downstream 6700 true Bd1: 35935323-35942022 Brachypodium distachyon
Bradi1g39206 1.0kb downstream 1.0kb downstream 1000 false Bd1: 35941023-35942022 Brachypodium distachyon
Bradi1g39206 2.0kb upstream 2.0kb upstream 7700 true Bd1: 35933323-35941022 Brachypodium distachyon
Bradi1g39206 2.0kb upstream 2.0kb upstream 2000 false Bd1: 35933323-35935322 Brachypodium distachyon
Bradi1g39206 2.0kb downstream 2.0kb downstream 7700 true Bd1: 35935323-35943022 Brachypodium distachyon
Bradi1g39206 2.0kb downstream 2.0kb downstream 2000 false Bd1: 35941023-35943022 Brachypodium distachyon
Bradi1g39206 5.0kb upstream 5.0kb upstream 10700 true Bd1: 35930323-35941022 Brachypodium distachyon
Bradi1g39206 5.0kb upstream 5.0kb upstream 5000 false Bd1: 35930323-35935322 Brachypodium distachyon
Bradi1g39206 5.0kb downstream 5.0kb downstream 10700 true Bd1: 35935323-35946022 Brachypodium distachyon
Bradi1g39206 5.0kb downstream 5.0kb downstream 5000 false Bd1: 35941023-35946022 Brachypodium distachyon
Bradi1g39206 10.0kb upstream 10.0kb upstream 15700 true Bd1: 35925323-35941022 Brachypodium distachyon
Bradi1g39206 10.0kb upstream 10.0kb upstream 10000 false Bd1: 35925323-35935322 Brachypodium distachyon
Bradi1g39206 10.0kb downstream 10.0kb downstream 15700 true Bd1: 35935323-35951022 Brachypodium distachyon
Bradi1g39206 10.0kb downstream 10.0kb downstream 10000 false Bd1: 35941023-35951022 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586264 5269 Grass View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.003     Low Low
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.08     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.116     Low High
cufflinks 0.049     Low High
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain