Gene : Bradi5g23340 B. distachyon v3.1
Defline:  (1 of 1) PTHR22952//PTHR22952:SF188 - CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2742
Name:  ? Bradi5g23340 Secondary Identifier:  ? PAC:32811159
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g23340 0.5kb upstream 0.5kb upstream 6999 true Bd5: 25470637-25477635 Brachypodium distachyon
Bradi5g23340 0.5kb upstream 0.5kb upstream 500 false Bd5: 25470637-25471136 Brachypodium distachyon
Bradi5g23340 0.5kb downstream 0.5kb downstream 6999 true Bd5: 25471137-25478135 Brachypodium distachyon
Bradi5g23340 0.5kb downstream 0.5kb downstream 500 false Bd5: 25477636-25478135 Brachypodium distachyon
Bradi5g23340 1.0kb upstream 1.0kb upstream 7499 true Bd5: 25470137-25477635 Brachypodium distachyon
Bradi5g23340 1.0kb upstream 1.0kb upstream 1000 false Bd5: 25470137-25471136 Brachypodium distachyon
Bradi5g23340 1.0kb downstream 1.0kb downstream 7499 true Bd5: 25471137-25478635 Brachypodium distachyon
Bradi5g23340 1.0kb downstream 1.0kb downstream 1000 false Bd5: 25477636-25478635 Brachypodium distachyon
Bradi5g23340 2.0kb upstream 2.0kb upstream 8499 true Bd5: 25469137-25477635 Brachypodium distachyon
Bradi5g23340 2.0kb upstream 2.0kb upstream 2000 false Bd5: 25469137-25471136 Brachypodium distachyon
Bradi5g23340 2.0kb downstream 2.0kb downstream 8499 true Bd5: 25471137-25479635 Brachypodium distachyon
Bradi5g23340 2.0kb downstream 2.0kb downstream 2000 false Bd5: 25477636-25479635 Brachypodium distachyon
Bradi5g23340 5.0kb upstream 5.0kb upstream 11499 true Bd5: 25466137-25477635 Brachypodium distachyon
Bradi5g23340 5.0kb upstream 5.0kb upstream 5000 false Bd5: 25466137-25471136 Brachypodium distachyon
Bradi5g23340 5.0kb downstream 5.0kb downstream 11499 true Bd5: 25471137-25482635 Brachypodium distachyon
Bradi5g23340 5.0kb downstream 5.0kb downstream 5000 false Bd5: 25477636-25482635 Brachypodium distachyon
Bradi5g23340 10.0kb upstream 10.0kb upstream 16499 true Bd5: 25461137-25477635 Brachypodium distachyon
Bradi5g23340 10.0kb upstream 10.0kb upstream 10000 false Bd5: 25461137-25471136 Brachypodium distachyon
Bradi5g23340 10.0kb downstream 10.0kb downstream 16499 true Bd5: 25471137-25487635 Brachypodium distachyon
Bradi5g23340 10.0kb downstream 10.0kb downstream 10000 false Bd5: 25477636-25487635 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580353 5269 Grass View MSA
122045464 5273 Angiosperm View MSA
121310452 5274 Embryophyte View MSA
123347930 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.374       High
cufflinks 0.773        
cufflinks 0.45        
cufflinks 0.984        
cufflinks 0.239       Low
cufflinks 0.694        
cufflinks 0.677        
cufflinks 1.235        
cufflinks 1.168        
cufflinks 0.892        
cufflinks 0.714        
cufflinks 0.393       Low
cufflinks 0.725        
cufflinks 0.628        
cufflinks 0.838        
cufflinks 0.568        
cufflinks 0.716        
cufflinks 1.62       High
cufflinks 0.356       Low
cufflinks 0.4       Low
cufflinks 2.57       High
cufflinks 0.78        
cufflinks 1.138        
cufflinks 1.133        
cufflinks 0.922        
cufflinks 0.447        
cufflinks 0.863        
cufflinks 0.661        
cufflinks 0.587        
cufflinks 0.701        

0 Strain