Gene : Bradi5g21560 B. distachyon v3.1
Defline:  (1 of 23) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  2506
Name:  ? Bradi5g21560 Secondary Identifier:  ? PAC:32810602
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g21560 0.5kb upstream 0.5kb upstream 2828 true Bd5: 24297365-24300192 Brachypodium distachyon
Bradi5g21560 0.5kb upstream 0.5kb upstream 500 false Bd5: 24299693-24300192 Brachypodium distachyon
Bradi5g21560 0.5kb downstream 0.5kb downstream 2828 true Bd5: 24296865-24299692 Brachypodium distachyon
Bradi5g21560 0.5kb downstream 0.5kb downstream 500 false Bd5: 24296865-24297364 Brachypodium distachyon
Bradi5g21560 1.0kb upstream 1.0kb upstream 3328 true Bd5: 24297365-24300692 Brachypodium distachyon
Bradi5g21560 1.0kb upstream 1.0kb upstream 1000 false Bd5: 24299693-24300692 Brachypodium distachyon
Bradi5g21560 1.0kb downstream 1.0kb downstream 3328 true Bd5: 24296365-24299692 Brachypodium distachyon
Bradi5g21560 1.0kb downstream 1.0kb downstream 1000 false Bd5: 24296365-24297364 Brachypodium distachyon
Bradi5g21560 2.0kb upstream 2.0kb upstream 4328 true Bd5: 24297365-24301692 Brachypodium distachyon
Bradi5g21560 2.0kb upstream 2.0kb upstream 2000 false Bd5: 24299693-24301692 Brachypodium distachyon
Bradi5g21560 2.0kb downstream 2.0kb downstream 4328 true Bd5: 24295365-24299692 Brachypodium distachyon
Bradi5g21560 2.0kb downstream 2.0kb downstream 2000 false Bd5: 24295365-24297364 Brachypodium distachyon
Bradi5g21560 5.0kb upstream 5.0kb upstream 7328 true Bd5: 24297365-24304692 Brachypodium distachyon
Bradi5g21560 5.0kb upstream 5.0kb upstream 5000 false Bd5: 24299693-24304692 Brachypodium distachyon
Bradi5g21560 5.0kb downstream 5.0kb downstream 7328 true Bd5: 24292365-24299692 Brachypodium distachyon
Bradi5g21560 5.0kb downstream 5.0kb downstream 5000 false Bd5: 24292365-24297364 Brachypodium distachyon
Bradi5g21560 10.0kb upstream 10.0kb upstream 12328 true Bd5: 24297365-24309692 Brachypodium distachyon
Bradi5g21560 10.0kb upstream 10.0kb upstream 10000 false Bd5: 24299693-24309692 Brachypodium distachyon
Bradi5g21560 10.0kb downstream 10.0kb downstream 12328 true Bd5: 24287365-24299692 Brachypodium distachyon
Bradi5g21560 10.0kb downstream 10.0kb downstream 10000 false Bd5: 24287365-24297364 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578650 5269 Grass View MSA
122044895 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.066        
cufflinks 2.573       High
cufflinks 2.64       High
cufflinks 1.808        
cufflinks 1.61        
cufflinks 1.962        
cufflinks 2.713       High
cufflinks 1.69        
cufflinks 1.831        
cufflinks 1.291        
cufflinks 1.284        
cufflinks 1.403        
cufflinks 0.793       Low
cufflinks 0.831       Low
cufflinks 0.519       Low
cufflinks 1.879        
cufflinks 1.814        
cufflinks 2.656       High
cufflinks 2.34        
cufflinks 0.33       Low
cufflinks 2.087        
cufflinks 1.547        
cufflinks 1.712        
cufflinks 1.25        
cufflinks 1.707        
cufflinks 2.017        
cufflinks 1.55        
cufflinks 1.921        
cufflinks 1.46        
cufflinks 2.29        

0 Strain