Gene : Bradi5g20960 B. distachyon v3.1
Defline:  (1 of 1) 2.1.1.177 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase / rRNA large subunit methyltransferase H Genomic Order:  2438
Name:  ? Bradi5g20960 Secondary Identifier:  ? PAC:32812002
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g20960 0.5kb upstream 0.5kb upstream 6248 true Bd5: 23892690-23898937 Brachypodium distachyon
Bradi5g20960 0.5kb upstream 0.5kb upstream 500 false Bd5: 23898438-23898937 Brachypodium distachyon
Bradi5g20960 0.5kb downstream 0.5kb downstream 6248 true Bd5: 23892190-23898437 Brachypodium distachyon
Bradi5g20960 0.5kb downstream 0.5kb downstream 500 false Bd5: 23892190-23892689 Brachypodium distachyon
Bradi5g20960 1.0kb upstream 1.0kb upstream 6748 true Bd5: 23892690-23899437 Brachypodium distachyon
Bradi5g20960 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23898438-23899437 Brachypodium distachyon
Bradi5g20960 1.0kb downstream 1.0kb downstream 6748 true Bd5: 23891690-23898437 Brachypodium distachyon
Bradi5g20960 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23891690-23892689 Brachypodium distachyon
Bradi5g20960 2.0kb upstream 2.0kb upstream 7748 true Bd5: 23892690-23900437 Brachypodium distachyon
Bradi5g20960 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23898438-23900437 Brachypodium distachyon
Bradi5g20960 2.0kb downstream 2.0kb downstream 7748 true Bd5: 23890690-23898437 Brachypodium distachyon
Bradi5g20960 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23890690-23892689 Brachypodium distachyon
Bradi5g20960 5.0kb upstream 5.0kb upstream 10748 true Bd5: 23892690-23903437 Brachypodium distachyon
Bradi5g20960 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23898438-23903437 Brachypodium distachyon
Bradi5g20960 5.0kb downstream 5.0kb downstream 10748 true Bd5: 23887690-23898437 Brachypodium distachyon
Bradi5g20960 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23887690-23892689 Brachypodium distachyon
Bradi5g20960 10.0kb upstream 10.0kb upstream 15748 true Bd5: 23892690-23908437 Brachypodium distachyon
Bradi5g20960 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23898438-23908437 Brachypodium distachyon
Bradi5g20960 10.0kb downstream 10.0kb downstream 15748 true Bd5: 23882690-23898437 Brachypodium distachyon
Bradi5g20960 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23882690-23892689 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041237 5273 Angiosperm View MSA
124580744 5269 Grass View MSA
121344768 5274 Embryophyte View MSA
123424832 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.747        
cufflinks 3.369        
cufflinks 3.594        
cufflinks 4.11        
cufflinks 2.724        
cufflinks 3.775        
cufflinks 3.329        
cufflinks 4.695        
cufflinks 5.204        
cufflinks 4.498        
cufflinks 5.624        
cufflinks 3.326        
cufflinks 4.832        
cufflinks 5.496        
cufflinks 6.487       High
cufflinks 3.345        
cufflinks 3.77        
cufflinks 0.591       Low
cufflinks 1.375       Low
cufflinks 0.899       Low
cufflinks 1.484       Low
cufflinks 4.367        
cufflinks 5.279        
cufflinks 4.687        
cufflinks 4.703        
cufflinks 3.353        
cufflinks 3.897        
cufflinks 4.053        
cufflinks 4.099        
cufflinks 1.885        

0 Strain