Gene : Bradi5g22130 B. distachyon v3.1
Defline:  (1 of 1) PTHR12419:SF4 - OTU DOMAIN-CONTAINING PROTEIN 5 Genomic Order:  2580
Name:  ? Bradi5g22130 Secondary Identifier:  ? PAC:32809563
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g22130 0.5kb upstream 0.5kb upstream 6366 true Bd5: 24757339-24763704 Brachypodium distachyon
Bradi5g22130 0.5kb upstream 0.5kb upstream 500 false Bd5: 24757339-24757838 Brachypodium distachyon
Bradi5g22130 0.5kb downstream 0.5kb downstream 6366 true Bd5: 24757839-24764204 Brachypodium distachyon
Bradi5g22130 0.5kb downstream 0.5kb downstream 500 false Bd5: 24763705-24764204 Brachypodium distachyon
Bradi5g22130 1.0kb upstream 1.0kb upstream 6866 true Bd5: 24756839-24763704 Brachypodium distachyon
Bradi5g22130 1.0kb upstream 1.0kb upstream 1000 false Bd5: 24756839-24757838 Brachypodium distachyon
Bradi5g22130 1.0kb downstream 1.0kb downstream 6866 true Bd5: 24757839-24764704 Brachypodium distachyon
Bradi5g22130 1.0kb downstream 1.0kb downstream 1000 false Bd5: 24763705-24764704 Brachypodium distachyon
Bradi5g22130 2.0kb upstream 2.0kb upstream 7866 true Bd5: 24755839-24763704 Brachypodium distachyon
Bradi5g22130 2.0kb upstream 2.0kb upstream 2000 false Bd5: 24755839-24757838 Brachypodium distachyon
Bradi5g22130 2.0kb downstream 2.0kb downstream 7866 true Bd5: 24757839-24765704 Brachypodium distachyon
Bradi5g22130 2.0kb downstream 2.0kb downstream 2000 false Bd5: 24763705-24765704 Brachypodium distachyon
Bradi5g22130 5.0kb upstream 5.0kb upstream 10866 true Bd5: 24752839-24763704 Brachypodium distachyon
Bradi5g22130 5.0kb upstream 5.0kb upstream 5000 false Bd5: 24752839-24757838 Brachypodium distachyon
Bradi5g22130 5.0kb downstream 5.0kb downstream 10866 true Bd5: 24757839-24768704 Brachypodium distachyon
Bradi5g22130 5.0kb downstream 5.0kb downstream 5000 false Bd5: 24763705-24768704 Brachypodium distachyon
Bradi5g22130 10.0kb upstream 10.0kb upstream 15866 true Bd5: 24747839-24763704 Brachypodium distachyon
Bradi5g22130 10.0kb upstream 10.0kb upstream 10000 false Bd5: 24747839-24757838 Brachypodium distachyon
Bradi5g22130 10.0kb downstream 10.0kb downstream 15866 true Bd5: 24757839-24773704 Brachypodium distachyon
Bradi5g22130 10.0kb downstream 10.0kb downstream 10000 false Bd5: 24763705-24773704 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584670 5269 Grass View MSA
122045711 5273 Angiosperm View MSA
121348334 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.2        
cufflinks 9.054        
cufflinks 10.941     High High
cufflinks 7.891        
cufflinks 5.44       Low
cufflinks 8.148        
cufflinks 8.232        
cufflinks 8.162        
cufflinks 8.313        
cufflinks 6.024        
cufflinks 6.757        
cufflinks 9.735     High  
cufflinks 6.889        
cufflinks 5.772       Low
cufflinks 8.239        
cufflinks 8.126        
cufflinks 6.629        
cufflinks 9.208        
cufflinks 9.37        
cufflinks 3.078       Low
cufflinks 7.183        
cufflinks 8.95        
cufflinks 8.233        
cufflinks 7.458        
cufflinks 7.124        
cufflinks 9.138        
cufflinks 7.677        
cufflinks 8.928        
cufflinks 8.496        
cufflinks 9.684        

0 Strain