Gene : Bradi1g35600 B. distachyon v3.1
Defline:  (1 of 1) K06001 - tryptophan synthase beta chain (trpB) Genomic Order:  4546
Name:  ? Bradi1g35600 Secondary Identifier:  ? PAC:32792065
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-4161 Brachypodium distachyon pathologic  
Bdistachyon PWY-6949 Brachypodium distachyon pathologic  
Bdistachyon TRPSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g35600 0.5kb upstream 0.5kb upstream 3441 true Bd1: 31283924-31287364 Brachypodium distachyon
Bradi1g35600 0.5kb upstream 0.5kb upstream 500 false Bd1: 31283924-31284423 Brachypodium distachyon
Bradi1g35600 0.5kb downstream 0.5kb downstream 3441 true Bd1: 31284424-31287864 Brachypodium distachyon
Bradi1g35600 0.5kb downstream 0.5kb downstream 500 false Bd1: 31287365-31287864 Brachypodium distachyon
Bradi1g35600 1.0kb upstream 1.0kb upstream 3941 true Bd1: 31283424-31287364 Brachypodium distachyon
Bradi1g35600 1.0kb upstream 1.0kb upstream 1000 false Bd1: 31283424-31284423 Brachypodium distachyon
Bradi1g35600 1.0kb downstream 1.0kb downstream 3941 true Bd1: 31284424-31288364 Brachypodium distachyon
Bradi1g35600 1.0kb downstream 1.0kb downstream 1000 false Bd1: 31287365-31288364 Brachypodium distachyon
Bradi1g35600 2.0kb upstream 2.0kb upstream 4941 true Bd1: 31282424-31287364 Brachypodium distachyon
Bradi1g35600 2.0kb upstream 2.0kb upstream 2000 false Bd1: 31282424-31284423 Brachypodium distachyon
Bradi1g35600 2.0kb downstream 2.0kb downstream 4941 true Bd1: 31284424-31289364 Brachypodium distachyon
Bradi1g35600 2.0kb downstream 2.0kb downstream 2000 false Bd1: 31287365-31289364 Brachypodium distachyon
Bradi1g35600 5.0kb upstream 5.0kb upstream 7941 true Bd1: 31279424-31287364 Brachypodium distachyon
Bradi1g35600 5.0kb upstream 5.0kb upstream 5000 false Bd1: 31279424-31284423 Brachypodium distachyon
Bradi1g35600 5.0kb downstream 5.0kb downstream 7941 true Bd1: 31284424-31292364 Brachypodium distachyon
Bradi1g35600 5.0kb downstream 5.0kb downstream 5000 false Bd1: 31287365-31292364 Brachypodium distachyon
Bradi1g35600 10.0kb upstream 10.0kb upstream 12941 true Bd1: 31274424-31287364 Brachypodium distachyon
Bradi1g35600 10.0kb upstream 10.0kb upstream 10000 false Bd1: 31274424-31284423 Brachypodium distachyon
Bradi1g35600 10.0kb downstream 10.0kb downstream 12941 true Bd1: 31284424-31297364 Brachypodium distachyon
Bradi1g35600 10.0kb downstream 10.0kb downstream 10000 false Bd1: 31287365-31297364 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571287 5269 Grass View MSA
122043348 5273 Angiosperm View MSA
121348084 5274 Embryophyte View MSA
123380724 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.884        
cufflinks 7.728        
cufflinks 10.808     High  
cufflinks 7.405        
cufflinks 10.063     High  
cufflinks 7.154        
cufflinks 8.303        
cufflinks 5.793        
cufflinks 6.756        
cufflinks 8.228        
cufflinks 5.442        
cufflinks 6.123        
cufflinks 0.968       Low
cufflinks 1.114       Low
cufflinks 3.407        
cufflinks 7.856        
cufflinks 9.868        
cufflinks 44.875     High High
cufflinks 16.608     High  
cufflinks 16.049     High  
cufflinks 12.168     High  
cufflinks 8.095        
cufflinks 6.508        
cufflinks 5.862        
cufflinks 6.3        
cufflinks 9.06        
cufflinks 3.429        
cufflinks 9.946        
cufflinks 8.429        
cufflinks 12.332     High  

0 Strain