Gene : Bradi5g05195 B. distachyon v3.1
Defline:  (1 of 91) PF13966 - zinc-binding in reverse transcriptase (zf-RVT) Genomic Order:  575
Name:  ? Bradi5g05195 Secondary Identifier:  ? PAC:32811296
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g05195 0.5kb upstream 0.5kb upstream 1926 true Bd5: 6732735-6734660 Brachypodium distachyon
Bradi5g05195 0.5kb upstream 0.5kb upstream 500 false Bd5: 6732735-6733234 Brachypodium distachyon
Bradi5g05195 0.5kb downstream 0.5kb downstream 1926 true Bd5: 6733235-6735160 Brachypodium distachyon
Bradi5g05195 0.5kb downstream 0.5kb downstream 500 false Bd5: 6734661-6735160 Brachypodium distachyon
Bradi5g05195 1.0kb upstream 1.0kb upstream 2426 true Bd5: 6732235-6734660 Brachypodium distachyon
Bradi5g05195 1.0kb upstream 1.0kb upstream 1000 false Bd5: 6732235-6733234 Brachypodium distachyon
Bradi5g05195 1.0kb downstream 1.0kb downstream 2426 true Bd5: 6733235-6735660 Brachypodium distachyon
Bradi5g05195 1.0kb downstream 1.0kb downstream 1000 false Bd5: 6734661-6735660 Brachypodium distachyon
Bradi5g05195 2.0kb upstream 2.0kb upstream 3426 true Bd5: 6731235-6734660 Brachypodium distachyon
Bradi5g05195 2.0kb upstream 2.0kb upstream 2000 false Bd5: 6731235-6733234 Brachypodium distachyon
Bradi5g05195 2.0kb downstream 2.0kb downstream 3426 true Bd5: 6733235-6736660 Brachypodium distachyon
Bradi5g05195 2.0kb downstream 2.0kb downstream 2000 false Bd5: 6734661-6736660 Brachypodium distachyon
Bradi5g05195 5.0kb upstream 5.0kb upstream 6426 true Bd5: 6728235-6734660 Brachypodium distachyon
Bradi5g05195 5.0kb upstream 5.0kb upstream 5000 false Bd5: 6728235-6733234 Brachypodium distachyon
Bradi5g05195 5.0kb downstream 5.0kb downstream 6426 true Bd5: 6733235-6739660 Brachypodium distachyon
Bradi5g05195 5.0kb downstream 5.0kb downstream 5000 false Bd5: 6734661-6739660 Brachypodium distachyon
Bradi5g05195 10.0kb upstream 10.0kb upstream 11426 true Bd5: 6723235-6734660 Brachypodium distachyon
Bradi5g05195 10.0kb upstream 10.0kb upstream 10000 false Bd5: 6723235-6733234 Brachypodium distachyon
Bradi5g05195 10.0kb downstream 10.0kb downstream 11426 true Bd5: 6733235-6744660 Brachypodium distachyon
Bradi5g05195 10.0kb downstream 10.0kb downstream 10000 false Bd5: 6734661-6744660 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586825 5269 Grass View MSA
122051690 5273 Angiosperm View MSA
121351675 5274 Embryophyte View MSA
123428354 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.032     Low  
cufflinks 0.035     Low  
cufflinks 0.028     Low  
cufflinks 0.041     Low  
cufflinks 0.261       High
cufflinks 0.05     Low  
cufflinks 0.046     Low  
cufflinks 0.014     Low Low
cufflinks 0.07     Low  
cufflinks 0.024     Low  
cufflinks 0.023     Low  
cufflinks 0.013     Low Low
cufflinks 0.016     Low Low
cufflinks 0.047     Low  
cufflinks 0.053     Low  
cufflinks 0.033     Low  
cufflinks 0.06     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.093     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.041     Low  
cufflinks 0.047     Low  
cufflinks 0.024     Low  
cufflinks 0.047     Low  
cufflinks 0.078     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.069     Low  
cufflinks 0.017     Low Low

0 Strain