Gene : Bradi1g35940 B. distachyon v3.1
Defline:  (1 of 1) PTHR10210//PTHR10210:SF52 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE // SUBFAMILY NOT NAMED Genomic Order:  4590
Name:  ? Bradi1g35940 Secondary Identifier:  ? PAC:32792602
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY0-662 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g35940 0.5kb upstream 0.5kb upstream 4423 true Bd1: 31683357-31687779 Brachypodium distachyon
Bradi1g35940 0.5kb upstream 0.5kb upstream 500 false Bd1: 31683357-31683856 Brachypodium distachyon
Bradi1g35940 0.5kb downstream 0.5kb downstream 4423 true Bd1: 31683857-31688279 Brachypodium distachyon
Bradi1g35940 0.5kb downstream 0.5kb downstream 500 false Bd1: 31687780-31688279 Brachypodium distachyon
Bradi1g35940 1.0kb upstream 1.0kb upstream 4923 true Bd1: 31682857-31687779 Brachypodium distachyon
Bradi1g35940 1.0kb upstream 1.0kb upstream 1000 false Bd1: 31682857-31683856 Brachypodium distachyon
Bradi1g35940 1.0kb downstream 1.0kb downstream 4923 true Bd1: 31683857-31688779 Brachypodium distachyon
Bradi1g35940 1.0kb downstream 1.0kb downstream 1000 false Bd1: 31687780-31688779 Brachypodium distachyon
Bradi1g35940 2.0kb upstream 2.0kb upstream 5923 true Bd1: 31681857-31687779 Brachypodium distachyon
Bradi1g35940 2.0kb upstream 2.0kb upstream 2000 false Bd1: 31681857-31683856 Brachypodium distachyon
Bradi1g35940 2.0kb downstream 2.0kb downstream 5923 true Bd1: 31683857-31689779 Brachypodium distachyon
Bradi1g35940 2.0kb downstream 2.0kb downstream 2000 false Bd1: 31687780-31689779 Brachypodium distachyon
Bradi1g35940 5.0kb upstream 5.0kb upstream 8923 true Bd1: 31678857-31687779 Brachypodium distachyon
Bradi1g35940 5.0kb upstream 5.0kb upstream 5000 false Bd1: 31678857-31683856 Brachypodium distachyon
Bradi1g35940 5.0kb downstream 5.0kb downstream 8923 true Bd1: 31683857-31692779 Brachypodium distachyon
Bradi1g35940 5.0kb downstream 5.0kb downstream 5000 false Bd1: 31687780-31692779 Brachypodium distachyon
Bradi1g35940 10.0kb upstream 10.0kb upstream 13923 true Bd1: 31673857-31687779 Brachypodium distachyon
Bradi1g35940 10.0kb upstream 10.0kb upstream 10000 false Bd1: 31673857-31683856 Brachypodium distachyon
Bradi1g35940 10.0kb downstream 10.0kb downstream 13923 true Bd1: 31683857-31697779 Brachypodium distachyon
Bradi1g35940 10.0kb downstream 10.0kb downstream 10000 false Bd1: 31687780-31697779 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992428 5273 Angiosperm View MSA
124568594 5269 Grass View MSA
121262786 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.423       Low
cufflinks 7.716        
cufflinks 16.214     High High
cufflinks 7.966        
cufflinks 2.402       Low
cufflinks 6.134        
cufflinks 6.059        
cufflinks 3.846        
cufflinks 5.379        
cufflinks 15.467     High High
cufflinks 8.629     High  
cufflinks 5.172        
cufflinks 6.976        
cufflinks 7.328        
cufflinks 3.775        
cufflinks 8.009        
cufflinks 4.048        
cufflinks 11.449        
cufflinks 4.46        
cufflinks 6.121        
cufflinks 5.925        
cufflinks 20.266     High High
cufflinks 3.298       Low
cufflinks 3.727        
cufflinks 5.318        
cufflinks 16.094     High High
cufflinks 7.663        
cufflinks 16.623     High High
cufflinks 19.579     High High
cufflinks 3.487       Low

0 Strain