Gene : Bradi1g43447 B. distachyon v3.1
Defline:  (1 of 1) PTHR31573:SF1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 Genomic Order:  5344
Name:  ? Bradi1g43447 Secondary Identifier:  ? PAC:32796805
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g43447 0.5kb upstream 0.5kb upstream 3882 true Bd1: 41352409-41356290 Brachypodium distachyon
Bradi1g43447 0.5kb upstream 0.5kb upstream 500 false Bd1: 41355791-41356290 Brachypodium distachyon
Bradi1g43447 0.5kb downstream 0.5kb downstream 3882 true Bd1: 41351909-41355790 Brachypodium distachyon
Bradi1g43447 0.5kb downstream 0.5kb downstream 500 false Bd1: 41351909-41352408 Brachypodium distachyon
Bradi1g43447 1.0kb upstream 1.0kb upstream 4382 true Bd1: 41352409-41356790 Brachypodium distachyon
Bradi1g43447 1.0kb upstream 1.0kb upstream 1000 false Bd1: 41355791-41356790 Brachypodium distachyon
Bradi1g43447 1.0kb downstream 1.0kb downstream 4382 true Bd1: 41351409-41355790 Brachypodium distachyon
Bradi1g43447 1.0kb downstream 1.0kb downstream 1000 false Bd1: 41351409-41352408 Brachypodium distachyon
Bradi1g43447 2.0kb upstream 2.0kb upstream 5382 true Bd1: 41352409-41357790 Brachypodium distachyon
Bradi1g43447 2.0kb upstream 2.0kb upstream 2000 false Bd1: 41355791-41357790 Brachypodium distachyon
Bradi1g43447 2.0kb downstream 2.0kb downstream 5382 true Bd1: 41350409-41355790 Brachypodium distachyon
Bradi1g43447 2.0kb downstream 2.0kb downstream 2000 false Bd1: 41350409-41352408 Brachypodium distachyon
Bradi1g43447 5.0kb upstream 5.0kb upstream 8382 true Bd1: 41352409-41360790 Brachypodium distachyon
Bradi1g43447 5.0kb upstream 5.0kb upstream 5000 false Bd1: 41355791-41360790 Brachypodium distachyon
Bradi1g43447 5.0kb downstream 5.0kb downstream 8382 true Bd1: 41347409-41355790 Brachypodium distachyon
Bradi1g43447 5.0kb downstream 5.0kb downstream 5000 false Bd1: 41347409-41352408 Brachypodium distachyon
Bradi1g43447 10.0kb upstream 10.0kb upstream 13382 true Bd1: 41352409-41365790 Brachypodium distachyon
Bradi1g43447 10.0kb upstream 10.0kb upstream 10000 false Bd1: 41355791-41365790 Brachypodium distachyon
Bradi1g43447 10.0kb downstream 10.0kb downstream 13382 true Bd1: 41342409-41355790 Brachypodium distachyon
Bradi1g43447 10.0kb downstream 10.0kb downstream 10000 false Bd1: 41342409-41352408 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579907 5269 Grass View MSA
122048951 5273 Angiosperm View MSA
121351428 5274 Embryophyte View MSA
123423770 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.773       Low
cufflinks 1.539        
cufflinks 1.852        
cufflinks 1.456        
cufflinks 1.361        
cufflinks 1.33        
cufflinks 1.765        
cufflinks 1.57        
cufflinks 1.126        
cufflinks 1.264        
cufflinks 1.288        
cufflinks 0.955        
cufflinks 0.802       Low
cufflinks 1.219        
cufflinks 0.943        
cufflinks 1.266        
cufflinks 1.51        
cufflinks 0.761       Low
cufflinks 3.084       High
cufflinks 0.238       Low
cufflinks 2.138       High
cufflinks 1.081        
cufflinks 1.589        
cufflinks 1.347        
cufflinks 1.45        
cufflinks 1.689        
cufflinks 0.941        
cufflinks 1.812        
cufflinks 1.42        
cufflinks 1.345        

0 Strain