Gene : Bradi1g44530 B. distachyon v3.1
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  5492
Name:  ? Bradi1g44530 Secondary Identifier:  ? PAC:32802054
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g44530 0.5kb upstream 0.5kb upstream 7467 true Bd1: 42846608-42854074 Brachypodium distachyon
Bradi1g44530 0.5kb upstream 0.5kb upstream 500 false Bd1: 42853575-42854074 Brachypodium distachyon
Bradi1g44530 0.5kb downstream 0.5kb downstream 7467 true Bd1: 42846108-42853574 Brachypodium distachyon
Bradi1g44530 0.5kb downstream 0.5kb downstream 500 false Bd1: 42846108-42846607 Brachypodium distachyon
Bradi1g44530 1.0kb upstream 1.0kb upstream 7967 true Bd1: 42846608-42854574 Brachypodium distachyon
Bradi1g44530 1.0kb upstream 1.0kb upstream 1000 false Bd1: 42853575-42854574 Brachypodium distachyon
Bradi1g44530 1.0kb downstream 1.0kb downstream 7967 true Bd1: 42845608-42853574 Brachypodium distachyon
Bradi1g44530 1.0kb downstream 1.0kb downstream 1000 false Bd1: 42845608-42846607 Brachypodium distachyon
Bradi1g44530 2.0kb upstream 2.0kb upstream 8967 true Bd1: 42846608-42855574 Brachypodium distachyon
Bradi1g44530 2.0kb upstream 2.0kb upstream 2000 false Bd1: 42853575-42855574 Brachypodium distachyon
Bradi1g44530 2.0kb downstream 2.0kb downstream 8967 true Bd1: 42844608-42853574 Brachypodium distachyon
Bradi1g44530 2.0kb downstream 2.0kb downstream 2000 false Bd1: 42844608-42846607 Brachypodium distachyon
Bradi1g44530 5.0kb upstream 5.0kb upstream 11967 true Bd1: 42846608-42858574 Brachypodium distachyon
Bradi1g44530 5.0kb upstream 5.0kb upstream 5000 false Bd1: 42853575-42858574 Brachypodium distachyon
Bradi1g44530 5.0kb downstream 5.0kb downstream 11967 true Bd1: 42841608-42853574 Brachypodium distachyon
Bradi1g44530 5.0kb downstream 5.0kb downstream 5000 false Bd1: 42841608-42846607 Brachypodium distachyon
Bradi1g44530 10.0kb upstream 10.0kb upstream 16967 true Bd1: 42846608-42863574 Brachypodium distachyon
Bradi1g44530 10.0kb upstream 10.0kb upstream 10000 false Bd1: 42853575-42863574 Brachypodium distachyon
Bradi1g44530 10.0kb downstream 10.0kb downstream 16967 true Bd1: 42836608-42853574 Brachypodium distachyon
Bradi1g44530 10.0kb downstream 10.0kb downstream 10000 false Bd1: 42836608-42846607 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573115 5269 Grass View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.96     High  
cufflinks 24.877     High  
cufflinks 24.204     High  
cufflinks 21.989     High  
cufflinks 8.14        
cufflinks 19.462     High  
cufflinks 19.137     High  
cufflinks 14.048     High  
cufflinks 16.67     High  
cufflinks 11.652     High  
cufflinks 18.465     High  
cufflinks 23.613     High  
cufflinks 18.176     High  
cufflinks 16.257     High  
cufflinks 16.53     High  
cufflinks 20.859     High  
cufflinks 9.141        
cufflinks 1.612       Low
cufflinks 4.207       Low
cufflinks 2.131       Low
cufflinks 5.337       Low
cufflinks 20.607     High  
cufflinks 14.334     High  
cufflinks 16.278     High  
cufflinks 16.461     High  
cufflinks 20.213     High  
cufflinks 13.787     High  
cufflinks 17.617     High  
cufflinks 18.556     High  
cufflinks 13.423     High  

0 Strain