Gene : Bradi5g21900 B. distachyon v3.1
Defline:  (1 of 1) 4.2.1.19 - Imidazoleglycerol-phosphate dehydratase Genomic Order:  2552
Name:  ? Bradi5g21900 Secondary Identifier:  ? PAC:32808623
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon HISTSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g21900 0.5kb upstream 0.5kb upstream 4388 true Bd5: 24573732-24578119 Brachypodium distachyon
Bradi5g21900 0.5kb upstream 0.5kb upstream 500 false Bd5: 24573732-24574231 Brachypodium distachyon
Bradi5g21900 0.5kb downstream 0.5kb downstream 4388 true Bd5: 24574232-24578619 Brachypodium distachyon
Bradi5g21900 0.5kb downstream 0.5kb downstream 500 false Bd5: 24578120-24578619 Brachypodium distachyon
Bradi5g21900 1.0kb upstream 1.0kb upstream 4888 true Bd5: 24573232-24578119 Brachypodium distachyon
Bradi5g21900 1.0kb upstream 1.0kb upstream 1000 false Bd5: 24573232-24574231 Brachypodium distachyon
Bradi5g21900 1.0kb downstream 1.0kb downstream 4888 true Bd5: 24574232-24579119 Brachypodium distachyon
Bradi5g21900 1.0kb downstream 1.0kb downstream 1000 false Bd5: 24578120-24579119 Brachypodium distachyon
Bradi5g21900 2.0kb upstream 2.0kb upstream 5888 true Bd5: 24572232-24578119 Brachypodium distachyon
Bradi5g21900 2.0kb upstream 2.0kb upstream 2000 false Bd5: 24572232-24574231 Brachypodium distachyon
Bradi5g21900 2.0kb downstream 2.0kb downstream 5888 true Bd5: 24574232-24580119 Brachypodium distachyon
Bradi5g21900 2.0kb downstream 2.0kb downstream 2000 false Bd5: 24578120-24580119 Brachypodium distachyon
Bradi5g21900 5.0kb upstream 5.0kb upstream 8888 true Bd5: 24569232-24578119 Brachypodium distachyon
Bradi5g21900 5.0kb upstream 5.0kb upstream 5000 false Bd5: 24569232-24574231 Brachypodium distachyon
Bradi5g21900 5.0kb downstream 5.0kb downstream 8888 true Bd5: 24574232-24583119 Brachypodium distachyon
Bradi5g21900 5.0kb downstream 5.0kb downstream 5000 false Bd5: 24578120-24583119 Brachypodium distachyon
Bradi5g21900 10.0kb upstream 10.0kb upstream 13888 true Bd5: 24564232-24578119 Brachypodium distachyon
Bradi5g21900 10.0kb upstream 10.0kb upstream 10000 false Bd5: 24564232-24574231 Brachypodium distachyon
Bradi5g21900 10.0kb downstream 10.0kb downstream 13888 true Bd5: 24574232-24588119 Brachypodium distachyon
Bradi5g21900 10.0kb downstream 10.0kb downstream 10000 false Bd5: 24578120-24588119 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577748 5269 Grass View MSA
122045110 5273 Angiosperm View MSA
121344413 5274 Embryophyte View MSA
123423926 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.542     High  
cufflinks 11.622     High  
cufflinks 9.709        
cufflinks 12.48     High High
cufflinks 5.629       Low
cufflinks 10.831     High  
cufflinks 11.647     High  
cufflinks 11.9     High  
cufflinks 11.099     High  
cufflinks 6.983        
cufflinks 8.865     High  
cufflinks 8.612        
cufflinks 11.399     High  
cufflinks 10.664     High  
cufflinks 9.257     High  
cufflinks 10.581     High  
cufflinks 11.575     High  
cufflinks 6.39        
cufflinks 10.326        
cufflinks 4.154       Low
cufflinks 7.095        
cufflinks 7.849        
cufflinks 11.267     High  
cufflinks 12.103     High  
cufflinks 11.159     High  
cufflinks 8.545        
cufflinks 14.049     High High
cufflinks 8.274        
cufflinks 8.267        
cufflinks 7.375        

0 Strain