Gene : Bradi5g21800 B. distachyon v3.1
Defline:  (1 of 2) PTHR22891//PTHR22891:SF4 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // PROTEIN ARGONAUTE 2-RELATED Genomic Order:  2540
Name:  ? Bradi5g21800 Secondary Identifier:  ? PAC:32809288
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g21800 0.5kb upstream 0.5kb upstream 4940 true Bd5: 24479444-24484383 Brachypodium distachyon
Bradi5g21800 0.5kb upstream 0.5kb upstream 500 false Bd5: 24479444-24479943 Brachypodium distachyon
Bradi5g21800 0.5kb downstream 0.5kb downstream 4940 true Bd5: 24479944-24484883 Brachypodium distachyon
Bradi5g21800 0.5kb downstream 0.5kb downstream 500 false Bd5: 24484384-24484883 Brachypodium distachyon
Bradi5g21800 1.0kb upstream 1.0kb upstream 5440 true Bd5: 24478944-24484383 Brachypodium distachyon
Bradi5g21800 1.0kb upstream 1.0kb upstream 1000 false Bd5: 24478944-24479943 Brachypodium distachyon
Bradi5g21800 1.0kb downstream 1.0kb downstream 5440 true Bd5: 24479944-24485383 Brachypodium distachyon
Bradi5g21800 1.0kb downstream 1.0kb downstream 1000 false Bd5: 24484384-24485383 Brachypodium distachyon
Bradi5g21800 2.0kb upstream 2.0kb upstream 6440 true Bd5: 24477944-24484383 Brachypodium distachyon
Bradi5g21800 2.0kb upstream 2.0kb upstream 2000 false Bd5: 24477944-24479943 Brachypodium distachyon
Bradi5g21800 2.0kb downstream 2.0kb downstream 6440 true Bd5: 24479944-24486383 Brachypodium distachyon
Bradi5g21800 2.0kb downstream 2.0kb downstream 2000 false Bd5: 24484384-24486383 Brachypodium distachyon
Bradi5g21800 5.0kb upstream 5.0kb upstream 9440 true Bd5: 24474944-24484383 Brachypodium distachyon
Bradi5g21800 5.0kb upstream 5.0kb upstream 5000 false Bd5: 24474944-24479943 Brachypodium distachyon
Bradi5g21800 5.0kb downstream 5.0kb downstream 9440 true Bd5: 24479944-24489383 Brachypodium distachyon
Bradi5g21800 5.0kb downstream 5.0kb downstream 5000 false Bd5: 24484384-24489383 Brachypodium distachyon
Bradi5g21800 10.0kb upstream 10.0kb upstream 14440 true Bd5: 24469944-24484383 Brachypodium distachyon
Bradi5g21800 10.0kb upstream 10.0kb upstream 10000 false Bd5: 24469944-24479943 Brachypodium distachyon
Bradi5g21800 10.0kb downstream 10.0kb downstream 14440 true Bd5: 24479944-24494383 Brachypodium distachyon
Bradi5g21800 10.0kb downstream 10.0kb downstream 10000 false Bd5: 24484384-24494383 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571292 5269 Grass View MSA
122049484 5273 Angiosperm View MSA
121311429 5274 Embryophyte View MSA
123428465 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.047     Low  
cufflinks 0.01     Low Low
cufflinks 0.013     Low Low
cufflinks 0.01     Low Low
cufflinks 0.122       High
cufflinks 0.023     Low  
cufflinks 0.028     Low  
cufflinks 0.034     Low  
cufflinks 0.011     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.255       High
cufflinks 0.406       High
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.052     Low  
cufflinks 0.035     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.065     Low  
cufflinks 0.761       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.071     Low  
cufflinks 0.028     Low  
cufflinks 0.012     Low Low
cufflinks 0.018     Low  
cufflinks 0.037     Low  
cufflinks 0.019     Low  
cufflinks 0.033     Low  
cufflinks 0.011     Low Low
cufflinks 0.018     Low  
cufflinks 0.129       High

0 Strain