Gene : Bradi1g42870 B. distachyon v3.1
Defline:  (1 of 4) PF00004//PF07724//PF10431 - ATPase family associated with various cellular activities (AAA) (AAA) // AAA domain (Cdc48 subfamily) (AAA_2) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) Genomic Order:  5266
Name:  ? Bradi1g42870 Secondary Identifier:  ? PAC:32793901
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g42870 0.5kb upstream 0.5kb upstream 3112 true Bd1: 40406305-40409416 Brachypodium distachyon
Bradi1g42870 0.5kb upstream 0.5kb upstream 500 false Bd1: 40406305-40406804 Brachypodium distachyon
Bradi1g42870 0.5kb downstream 0.5kb downstream 3112 true Bd1: 40406805-40409916 Brachypodium distachyon
Bradi1g42870 0.5kb downstream 0.5kb downstream 500 false Bd1: 40409417-40409916 Brachypodium distachyon
Bradi1g42870 1.0kb upstream 1.0kb upstream 3612 true Bd1: 40405805-40409416 Brachypodium distachyon
Bradi1g42870 1.0kb upstream 1.0kb upstream 1000 false Bd1: 40405805-40406804 Brachypodium distachyon
Bradi1g42870 1.0kb downstream 1.0kb downstream 3612 true Bd1: 40406805-40410416 Brachypodium distachyon
Bradi1g42870 1.0kb downstream 1.0kb downstream 1000 false Bd1: 40409417-40410416 Brachypodium distachyon
Bradi1g42870 2.0kb upstream 2.0kb upstream 4612 true Bd1: 40404805-40409416 Brachypodium distachyon
Bradi1g42870 2.0kb upstream 2.0kb upstream 2000 false Bd1: 40404805-40406804 Brachypodium distachyon
Bradi1g42870 2.0kb downstream 2.0kb downstream 4612 true Bd1: 40406805-40411416 Brachypodium distachyon
Bradi1g42870 2.0kb downstream 2.0kb downstream 2000 false Bd1: 40409417-40411416 Brachypodium distachyon
Bradi1g42870 5.0kb upstream 5.0kb upstream 7612 true Bd1: 40401805-40409416 Brachypodium distachyon
Bradi1g42870 5.0kb upstream 5.0kb upstream 5000 false Bd1: 40401805-40406804 Brachypodium distachyon
Bradi1g42870 5.0kb downstream 5.0kb downstream 7612 true Bd1: 40406805-40414416 Brachypodium distachyon
Bradi1g42870 5.0kb downstream 5.0kb downstream 5000 false Bd1: 40409417-40414416 Brachypodium distachyon
Bradi1g42870 10.0kb upstream 10.0kb upstream 12612 true Bd1: 40396805-40409416 Brachypodium distachyon
Bradi1g42870 10.0kb upstream 10.0kb upstream 10000 false Bd1: 40396805-40406804 Brachypodium distachyon
Bradi1g42870 10.0kb downstream 10.0kb downstream 12612 true Bd1: 40406805-40419416 Brachypodium distachyon
Bradi1g42870 10.0kb downstream 10.0kb downstream 10000 false Bd1: 40409417-40419416 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032336 5273 Angiosperm View MSA
124546000 5269 Grass View MSA
121352583 5274 Embryophyte View MSA
123382886 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.078     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain