Gene : Bradi5g20490 B. distachyon v3.1
Defline:  (1 of 1) PTHR13748//PTHR13748:SF40 - COBW-RELATED Genomic Order:  2383
Name:  ? Bradi5g20490 Secondary Identifier:  ? PAC:32808491
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g20490 0.5kb upstream 0.5kb upstream 3783 true Bd5: 23536209-23539991 Brachypodium distachyon
Bradi5g20490 0.5kb upstream 0.5kb upstream 500 false Bd5: 23536209-23536708 Brachypodium distachyon
Bradi5g20490 0.5kb downstream 0.5kb downstream 3783 true Bd5: 23536709-23540491 Brachypodium distachyon
Bradi5g20490 0.5kb downstream 0.5kb downstream 500 false Bd5: 23539992-23540491 Brachypodium distachyon
Bradi5g20490 1.0kb upstream 1.0kb upstream 4283 true Bd5: 23535709-23539991 Brachypodium distachyon
Bradi5g20490 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23535709-23536708 Brachypodium distachyon
Bradi5g20490 1.0kb downstream 1.0kb downstream 4283 true Bd5: 23536709-23540991 Brachypodium distachyon
Bradi5g20490 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23539992-23540991 Brachypodium distachyon
Bradi5g20490 2.0kb upstream 2.0kb upstream 5283 true Bd5: 23534709-23539991 Brachypodium distachyon
Bradi5g20490 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23534709-23536708 Brachypodium distachyon
Bradi5g20490 2.0kb downstream 2.0kb downstream 5283 true Bd5: 23536709-23541991 Brachypodium distachyon
Bradi5g20490 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23539992-23541991 Brachypodium distachyon
Bradi5g20490 5.0kb upstream 5.0kb upstream 8283 true Bd5: 23531709-23539991 Brachypodium distachyon
Bradi5g20490 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23531709-23536708 Brachypodium distachyon
Bradi5g20490 5.0kb downstream 5.0kb downstream 8283 true Bd5: 23536709-23544991 Brachypodium distachyon
Bradi5g20490 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23539992-23544991 Brachypodium distachyon
Bradi5g20490 10.0kb upstream 10.0kb upstream 13283 true Bd5: 23526709-23539991 Brachypodium distachyon
Bradi5g20490 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23526709-23536708 Brachypodium distachyon
Bradi5g20490 10.0kb downstream 10.0kb downstream 13283 true Bd5: 23536709-23549991 Brachypodium distachyon
Bradi5g20490 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23539992-23549991 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573696 5269 Grass View MSA
122047317 5273 Angiosperm View MSA
121346816 5274 Embryophyte View MSA
123428327 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.248        
cufflinks 4.672        
cufflinks 3.946        
cufflinks 3.64        
cufflinks 2.19        
cufflinks 3.348        
cufflinks 3.939        
cufflinks 2.471        
cufflinks 3.837        
cufflinks 2.399        
cufflinks 1.567        
cufflinks 2.908        
cufflinks 1.231       Low
cufflinks 1.114       Low
cufflinks 1.263       Low
cufflinks 3.35        
cufflinks 5.313       High
cufflinks 7.258       High
cufflinks 3.787        
cufflinks 0.583       Low
cufflinks 4.217        
cufflinks 3.01        
cufflinks 2.86        
cufflinks 2.803        
cufflinks 4.541        
cufflinks 2.948        
cufflinks 1.775        
cufflinks 2.581        
cufflinks 2.762        
cufflinks 3.411        

0 Strain