Gene : Bradi1g42820 B. distachyon v3.1
Defline:  (1 of 1) PTHR30560:SF3 - TRIGGER FACTOR-LIKE PROTEIN TIG Genomic Order:  5262
Name:  ? Bradi1g42820 Secondary Identifier:  ? PAC:32798415
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g42820 0.5kb upstream 0.5kb upstream 6328 true Bd1: 40331361-40337688 Brachypodium distachyon
Bradi1g42820 0.5kb upstream 0.5kb upstream 500 false Bd1: 40337189-40337688 Brachypodium distachyon
Bradi1g42820 0.5kb downstream 0.5kb downstream 6328 true Bd1: 40330861-40337188 Brachypodium distachyon
Bradi1g42820 0.5kb downstream 0.5kb downstream 500 false Bd1: 40330861-40331360 Brachypodium distachyon
Bradi1g42820 1.0kb upstream 1.0kb upstream 6828 true Bd1: 40331361-40338188 Brachypodium distachyon
Bradi1g42820 1.0kb upstream 1.0kb upstream 1000 false Bd1: 40337189-40338188 Brachypodium distachyon
Bradi1g42820 1.0kb downstream 1.0kb downstream 6828 true Bd1: 40330361-40337188 Brachypodium distachyon
Bradi1g42820 1.0kb downstream 1.0kb downstream 1000 false Bd1: 40330361-40331360 Brachypodium distachyon
Bradi1g42820 2.0kb upstream 2.0kb upstream 7828 true Bd1: 40331361-40339188 Brachypodium distachyon
Bradi1g42820 2.0kb upstream 2.0kb upstream 2000 false Bd1: 40337189-40339188 Brachypodium distachyon
Bradi1g42820 2.0kb downstream 2.0kb downstream 7828 true Bd1: 40329361-40337188 Brachypodium distachyon
Bradi1g42820 2.0kb downstream 2.0kb downstream 2000 false Bd1: 40329361-40331360 Brachypodium distachyon
Bradi1g42820 5.0kb upstream 5.0kb upstream 10828 true Bd1: 40331361-40342188 Brachypodium distachyon
Bradi1g42820 5.0kb upstream 5.0kb upstream 5000 false Bd1: 40337189-40342188 Brachypodium distachyon
Bradi1g42820 5.0kb downstream 5.0kb downstream 10828 true Bd1: 40326361-40337188 Brachypodium distachyon
Bradi1g42820 5.0kb downstream 5.0kb downstream 5000 false Bd1: 40326361-40331360 Brachypodium distachyon
Bradi1g42820 10.0kb upstream 10.0kb upstream 15828 true Bd1: 40331361-40347188 Brachypodium distachyon
Bradi1g42820 10.0kb upstream 10.0kb upstream 10000 false Bd1: 40337189-40347188 Brachypodium distachyon
Bradi1g42820 10.0kb downstream 10.0kb downstream 15828 true Bd1: 40321361-40337188 Brachypodium distachyon
Bradi1g42820 10.0kb downstream 10.0kb downstream 10000 false Bd1: 40321361-40331360 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570933 5269 Grass View MSA
122042238 5273 Angiosperm View MSA
121345514 5274 Embryophyte View MSA
123423774 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.951     High  
cufflinks 76.696     High High
cufflinks 61.263     High  
cufflinks 83.065     High High
cufflinks 31.365     High  
cufflinks 52.324     High  
cufflinks 60.528     High  
cufflinks 33.771     High  
cufflinks 37.151     High  
cufflinks 48.066     High  
cufflinks 22.856     High  
cufflinks 52.207     High  
cufflinks 28.603     High  
cufflinks 20.417     High  
cufflinks 51.376     High  
cufflinks 60.826     High  
cufflinks 44.095     High  
cufflinks 5.13       Low
cufflinks 24.707     High  
cufflinks 16.965     High Low
cufflinks 25.085     High  
cufflinks 50.147     High  
cufflinks 33.983     High  
cufflinks 40.549     High  
cufflinks 52.077     High  
cufflinks 62.291     High  
cufflinks 19.13     High  
cufflinks 53.037     High  
cufflinks 54.787     High  
cufflinks 56.211     High  

0 Strain