Gene : Bradi5g20020 B. distachyon v3.1
Defline:  (1 of 1) PTHR30031//PTHR30031:SF2 - PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP // SUBFAMILY NOT NAMED Genomic Order:  2320
Name:  ? Bradi5g20020 Secondary Identifier:  ? PAC:32810469
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-7117 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g20020 0.5kb upstream 0.5kb upstream 4787 true Bd5: 23078416-23083202 Brachypodium distachyon
Bradi5g20020 0.5kb upstream 0.5kb upstream 500 false Bd5: 23082703-23083202 Brachypodium distachyon
Bradi5g20020 0.5kb downstream 0.5kb downstream 4787 true Bd5: 23077916-23082702 Brachypodium distachyon
Bradi5g20020 0.5kb downstream 0.5kb downstream 500 false Bd5: 23077916-23078415 Brachypodium distachyon
Bradi5g20020 1.0kb upstream 1.0kb upstream 5287 true Bd5: 23078416-23083702 Brachypodium distachyon
Bradi5g20020 1.0kb upstream 1.0kb upstream 1000 false Bd5: 23082703-23083702 Brachypodium distachyon
Bradi5g20020 1.0kb downstream 1.0kb downstream 5287 true Bd5: 23077416-23082702 Brachypodium distachyon
Bradi5g20020 1.0kb downstream 1.0kb downstream 1000 false Bd5: 23077416-23078415 Brachypodium distachyon
Bradi5g20020 2.0kb upstream 2.0kb upstream 6287 true Bd5: 23078416-23084702 Brachypodium distachyon
Bradi5g20020 2.0kb upstream 2.0kb upstream 2000 false Bd5: 23082703-23084702 Brachypodium distachyon
Bradi5g20020 2.0kb downstream 2.0kb downstream 6287 true Bd5: 23076416-23082702 Brachypodium distachyon
Bradi5g20020 2.0kb downstream 2.0kb downstream 2000 false Bd5: 23076416-23078415 Brachypodium distachyon
Bradi5g20020 5.0kb upstream 5.0kb upstream 9287 true Bd5: 23078416-23087702 Brachypodium distachyon
Bradi5g20020 5.0kb upstream 5.0kb upstream 5000 false Bd5: 23082703-23087702 Brachypodium distachyon
Bradi5g20020 5.0kb downstream 5.0kb downstream 9287 true Bd5: 23073416-23082702 Brachypodium distachyon
Bradi5g20020 5.0kb downstream 5.0kb downstream 5000 false Bd5: 23073416-23078415 Brachypodium distachyon
Bradi5g20020 10.0kb upstream 10.0kb upstream 14287 true Bd5: 23078416-23092702 Brachypodium distachyon
Bradi5g20020 10.0kb upstream 10.0kb upstream 10000 false Bd5: 23082703-23092702 Brachypodium distachyon
Bradi5g20020 10.0kb downstream 10.0kb downstream 14287 true Bd5: 23068416-23082702 Brachypodium distachyon
Bradi5g20020 10.0kb downstream 10.0kb downstream 10000 false Bd5: 23068416-23078415 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569372 5269 Grass View MSA
122049191 5273 Angiosperm View MSA
121348901 5274 Embryophyte View MSA
123381068 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.658        
cufflinks 2.955        
cufflinks 2.814        
cufflinks 2.767        
cufflinks 1.174       Low
cufflinks 2.418        
cufflinks 2.212        
cufflinks 2.503        
cufflinks 2.524        
cufflinks 2.17        
cufflinks 1.574        
cufflinks 1.661        
cufflinks 1.516        
cufflinks 1.533        
cufflinks 1.491        
cufflinks 2.4        
cufflinks 1.568        
cufflinks 3.33       High
cufflinks 0.931       Low
cufflinks 0.68       Low
cufflinks 1.616        
cufflinks 2.617        
cufflinks 2.273        
cufflinks 2.07        
cufflinks 2.482        
cufflinks 2.931        
cufflinks 2.445        
cufflinks 2.798        
cufflinks 2.545        
cufflinks 1.846        

0 Strain