Gene : Bradi1g47511 B. distachyon v3.1
Defline:  (1 of 19) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  5907
Name:  ? Bradi1g47511 Secondary Identifier:  ? PAC:32793100
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g47511 0.5kb upstream 0.5kb upstream 2848 true Bd1: 46222313-46225160 Brachypodium distachyon
Bradi1g47511 0.5kb upstream 0.5kb upstream 500 false Bd1: 46222313-46222812 Brachypodium distachyon
Bradi1g47511 0.5kb downstream 0.5kb downstream 2848 true Bd1: 46222813-46225660 Brachypodium distachyon
Bradi1g47511 0.5kb downstream 0.5kb downstream 500 false Bd1: 46225161-46225660 Brachypodium distachyon
Bradi1g47511 1.0kb upstream 1.0kb upstream 3348 true Bd1: 46221813-46225160 Brachypodium distachyon
Bradi1g47511 1.0kb upstream 1.0kb upstream 1000 false Bd1: 46221813-46222812 Brachypodium distachyon
Bradi1g47511 1.0kb downstream 1.0kb downstream 3348 true Bd1: 46222813-46226160 Brachypodium distachyon
Bradi1g47511 1.0kb downstream 1.0kb downstream 1000 false Bd1: 46225161-46226160 Brachypodium distachyon
Bradi1g47511 2.0kb upstream 2.0kb upstream 4348 true Bd1: 46220813-46225160 Brachypodium distachyon
Bradi1g47511 2.0kb upstream 2.0kb upstream 2000 false Bd1: 46220813-46222812 Brachypodium distachyon
Bradi1g47511 2.0kb downstream 2.0kb downstream 4348 true Bd1: 46222813-46227160 Brachypodium distachyon
Bradi1g47511 2.0kb downstream 2.0kb downstream 2000 false Bd1: 46225161-46227160 Brachypodium distachyon
Bradi1g47511 5.0kb upstream 5.0kb upstream 7348 true Bd1: 46217813-46225160 Brachypodium distachyon
Bradi1g47511 5.0kb upstream 5.0kb upstream 5000 false Bd1: 46217813-46222812 Brachypodium distachyon
Bradi1g47511 5.0kb downstream 5.0kb downstream 7348 true Bd1: 46222813-46230160 Brachypodium distachyon
Bradi1g47511 5.0kb downstream 5.0kb downstream 5000 false Bd1: 46225161-46230160 Brachypodium distachyon
Bradi1g47511 10.0kb upstream 10.0kb upstream 12348 true Bd1: 46212813-46225160 Brachypodium distachyon
Bradi1g47511 10.0kb upstream 10.0kb upstream 10000 false Bd1: 46212813-46222812 Brachypodium distachyon
Bradi1g47511 10.0kb downstream 10.0kb downstream 12348 true Bd1: 46222813-46235160 Brachypodium distachyon
Bradi1g47511 10.0kb downstream 10.0kb downstream 10000 false Bd1: 46225161-46235160 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 0.072     Low  
cufflinks 0.053     Low  
cufflinks 0.045     Low  
cufflinks 0.048     Low  
cufflinks 0.088     Low High
cufflinks 0.036     Low  
cufflinks 0.019     Low  
cufflinks 0.086     Low High
cufflinks 0.059     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.057     Low  
cufflinks 0.065     Low  
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.171       High
cufflinks 0.065     Low  
cufflinks 0.042     Low  
cufflinks 0.038     Low  
cufflinks 0.008     Low Low
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.058     Low  
cufflinks 0.052     Low  

0 Strain