Gene : Bradi1g47536 B. distachyon v3.1
Defline:  (1 of 19) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  5919
Name:  ? Bradi1g47536 Secondary Identifier:  ? PAC:32797053
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g47536 0.5kb upstream 0.5kb upstream 2883 true Bd1: 46301723-46304605 Brachypodium distachyon
Bradi1g47536 0.5kb upstream 0.5kb upstream 500 false Bd1: 46304106-46304605 Brachypodium distachyon
Bradi1g47536 0.5kb downstream 0.5kb downstream 2883 true Bd1: 46301223-46304105 Brachypodium distachyon
Bradi1g47536 0.5kb downstream 0.5kb downstream 500 false Bd1: 46301223-46301722 Brachypodium distachyon
Bradi1g47536 1.0kb upstream 1.0kb upstream 3383 true Bd1: 46301723-46305105 Brachypodium distachyon
Bradi1g47536 1.0kb upstream 1.0kb upstream 1000 false Bd1: 46304106-46305105 Brachypodium distachyon
Bradi1g47536 1.0kb downstream 1.0kb downstream 3383 true Bd1: 46300723-46304105 Brachypodium distachyon
Bradi1g47536 1.0kb downstream 1.0kb downstream 1000 false Bd1: 46300723-46301722 Brachypodium distachyon
Bradi1g47536 2.0kb upstream 2.0kb upstream 4383 true Bd1: 46301723-46306105 Brachypodium distachyon
Bradi1g47536 2.0kb upstream 2.0kb upstream 2000 false Bd1: 46304106-46306105 Brachypodium distachyon
Bradi1g47536 2.0kb downstream 2.0kb downstream 4383 true Bd1: 46299723-46304105 Brachypodium distachyon
Bradi1g47536 2.0kb downstream 2.0kb downstream 2000 false Bd1: 46299723-46301722 Brachypodium distachyon
Bradi1g47536 5.0kb upstream 5.0kb upstream 7383 true Bd1: 46301723-46309105 Brachypodium distachyon
Bradi1g47536 5.0kb upstream 5.0kb upstream 5000 false Bd1: 46304106-46309105 Brachypodium distachyon
Bradi1g47536 5.0kb downstream 5.0kb downstream 7383 true Bd1: 46296723-46304105 Brachypodium distachyon
Bradi1g47536 5.0kb downstream 5.0kb downstream 5000 false Bd1: 46296723-46301722 Brachypodium distachyon
Bradi1g47536 10.0kb upstream 10.0kb upstream 12383 true Bd1: 46301723-46314105 Brachypodium distachyon
Bradi1g47536 10.0kb upstream 10.0kb upstream 10000 false Bd1: 46304106-46314105 Brachypodium distachyon
Bradi1g47536 10.0kb downstream 10.0kb downstream 12383 true Bd1: 46291723-46304105 Brachypodium distachyon
Bradi1g47536 10.0kb downstream 10.0kb downstream 10000 false Bd1: 46291723-46301722 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.267        
cufflinks 0.239        
cufflinks 0.264        
cufflinks 0.182        
cufflinks 0.279        
cufflinks 0.255        
cufflinks 0.218        
cufflinks 0.139        
cufflinks 0.253        
cufflinks 0.261        
cufflinks 0.015     Low Low
cufflinks 0.176        
cufflinks 0.04     Low Low
cufflinks 0.009     Low Low
cufflinks 0.054     Low Low
cufflinks 0.161        
cufflinks 0.547       High
cufflinks 0.105     Low  
cufflinks 0.279        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.311        
cufflinks 0.228        
cufflinks 0.159        
cufflinks 0.251        
cufflinks 0.222        
cufflinks 0.235        
cufflinks 0.063     Low Low
cufflinks 0.308        
cufflinks 0.398        
cufflinks 0.39        

0 Strain