Gene : Bradi1g48540 B. distachyon v3.1
Defline:  (1 of 1) PTHR10209:SF226 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN Genomic Order:  6067
Name:  ? Bradi1g48540 Secondary Identifier:  ? PAC:32800352
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-3101 Brachypodium distachyon pathologic  
Bdistachyon PWY-5390 Brachypodium distachyon pathologic  
Bdistachyon PWY-5391 Brachypodium distachyon pathologic  
Bdistachyon PWY-6787 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g48540 0.5kb upstream 0.5kb upstream 2874 true Bd1: 47305319-47308192 Brachypodium distachyon
Bradi1g48540 0.5kb upstream 0.5kb upstream 500 false Bd1: 47307693-47308192 Brachypodium distachyon
Bradi1g48540 0.5kb downstream 0.5kb downstream 2874 true Bd1: 47304819-47307692 Brachypodium distachyon
Bradi1g48540 0.5kb downstream 0.5kb downstream 500 false Bd1: 47304819-47305318 Brachypodium distachyon
Bradi1g48540 1.0kb upstream 1.0kb upstream 3374 true Bd1: 47305319-47308692 Brachypodium distachyon
Bradi1g48540 1.0kb upstream 1.0kb upstream 1000 false Bd1: 47307693-47308692 Brachypodium distachyon
Bradi1g48540 1.0kb downstream 1.0kb downstream 3374 true Bd1: 47304319-47307692 Brachypodium distachyon
Bradi1g48540 1.0kb downstream 1.0kb downstream 1000 false Bd1: 47304319-47305318 Brachypodium distachyon
Bradi1g48540 2.0kb upstream 2.0kb upstream 4374 true Bd1: 47305319-47309692 Brachypodium distachyon
Bradi1g48540 2.0kb upstream 2.0kb upstream 2000 false Bd1: 47307693-47309692 Brachypodium distachyon
Bradi1g48540 2.0kb downstream 2.0kb downstream 4374 true Bd1: 47303319-47307692 Brachypodium distachyon
Bradi1g48540 2.0kb downstream 2.0kb downstream 2000 false Bd1: 47303319-47305318 Brachypodium distachyon
Bradi1g48540 5.0kb upstream 5.0kb upstream 7374 true Bd1: 47305319-47312692 Brachypodium distachyon
Bradi1g48540 5.0kb upstream 5.0kb upstream 5000 false Bd1: 47307693-47312692 Brachypodium distachyon
Bradi1g48540 5.0kb downstream 5.0kb downstream 7374 true Bd1: 47300319-47307692 Brachypodium distachyon
Bradi1g48540 5.0kb downstream 5.0kb downstream 5000 false Bd1: 47300319-47305318 Brachypodium distachyon
Bradi1g48540 10.0kb upstream 10.0kb upstream 12374 true Bd1: 47305319-47317692 Brachypodium distachyon
Bradi1g48540 10.0kb upstream 10.0kb upstream 10000 false Bd1: 47307693-47317692 Brachypodium distachyon
Bradi1g48540 10.0kb downstream 10.0kb downstream 12374 true Bd1: 47295319-47307692 Brachypodium distachyon
Bradi1g48540 10.0kb downstream 10.0kb downstream 10000 false Bd1: 47295319-47305318 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026742 5273 Angiosperm View MSA
124580358 5269 Grass View MSA
121347125 5274 Embryophyte View MSA
123380497 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.323       Low
cufflinks 3.929        
cufflinks 5.316        
cufflinks 3.906        
cufflinks 4.693        
cufflinks 3.302        
cufflinks 3.86        
cufflinks 3.346        
cufflinks 3.278        
cufflinks 6.086        
cufflinks 3.876        
cufflinks 3.023        
cufflinks 3.205        
cufflinks 3.586        
cufflinks 2.311       Low
cufflinks 3.501        
cufflinks 5.478        
cufflinks 8.16        
cufflinks 16.892     High High
cufflinks 25.63     High High
cufflinks 8.182        
cufflinks 4.543        
cufflinks 3.415        
cufflinks 3.038        
cufflinks 3.218        
cufflinks 5.687        
cufflinks 5.215        
cufflinks 6.76        
cufflinks 5.846        
cufflinks 4.205        

0 Strain