Gene : Bradi1g48635 B. distachyon v3.1
Defline:  (1 of 34) PF03101//PF04434//PF10551 - FAR1 DNA-binding domain (FAR1) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  6084
Name:  ? Bradi1g48635 Secondary Identifier:  ? PAC:32803921
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g48635 0.5kb upstream 0.5kb upstream 3224 true Bd1: 47446825-47450048 Brachypodium distachyon
Bradi1g48635 0.5kb upstream 0.5kb upstream 500 false Bd1: 47446825-47447324 Brachypodium distachyon
Bradi1g48635 0.5kb downstream 0.5kb downstream 3224 true Bd1: 47447325-47450548 Brachypodium distachyon
Bradi1g48635 0.5kb downstream 0.5kb downstream 500 false Bd1: 47450049-47450548 Brachypodium distachyon
Bradi1g48635 1.0kb upstream 1.0kb upstream 3724 true Bd1: 47446325-47450048 Brachypodium distachyon
Bradi1g48635 1.0kb upstream 1.0kb upstream 1000 false Bd1: 47446325-47447324 Brachypodium distachyon
Bradi1g48635 1.0kb downstream 1.0kb downstream 3724 true Bd1: 47447325-47451048 Brachypodium distachyon
Bradi1g48635 1.0kb downstream 1.0kb downstream 1000 false Bd1: 47450049-47451048 Brachypodium distachyon
Bradi1g48635 2.0kb upstream 2.0kb upstream 4724 true Bd1: 47445325-47450048 Brachypodium distachyon
Bradi1g48635 2.0kb upstream 2.0kb upstream 2000 false Bd1: 47445325-47447324 Brachypodium distachyon
Bradi1g48635 2.0kb downstream 2.0kb downstream 4724 true Bd1: 47447325-47452048 Brachypodium distachyon
Bradi1g48635 2.0kb downstream 2.0kb downstream 2000 false Bd1: 47450049-47452048 Brachypodium distachyon
Bradi1g48635 5.0kb upstream 5.0kb upstream 7724 true Bd1: 47442325-47450048 Brachypodium distachyon
Bradi1g48635 5.0kb upstream 5.0kb upstream 5000 false Bd1: 47442325-47447324 Brachypodium distachyon
Bradi1g48635 5.0kb downstream 5.0kb downstream 7724 true Bd1: 47447325-47455048 Brachypodium distachyon
Bradi1g48635 5.0kb downstream 5.0kb downstream 5000 false Bd1: 47450049-47455048 Brachypodium distachyon
Bradi1g48635 10.0kb upstream 10.0kb upstream 12724 true Bd1: 47437325-47450048 Brachypodium distachyon
Bradi1g48635 10.0kb upstream 10.0kb upstream 10000 false Bd1: 47437325-47447324 Brachypodium distachyon
Bradi1g48635 10.0kb downstream 10.0kb downstream 12724 true Bd1: 47447325-47460048 Brachypodium distachyon
Bradi1g48635 10.0kb downstream 10.0kb downstream 10000 false Bd1: 47450049-47460048 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031606 5273 Angiosperm View MSA
124589040 5269 Grass View MSA
121300621 5274 Embryophyte View MSA
123338368 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.011     Low  
cufflinks 0.057     Low  
cufflinks 0.056     Low  
cufflinks 0.092     Low High
cufflinks 0.009     Low Low
cufflinks 0.035     Low  
cufflinks 0.004     Low Low
cufflinks 0.029     Low  
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.024     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.113     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.037     Low  
cufflinks 0.008     Low Low
cufflinks 0.029     Low  
cufflinks 0.057     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.02     Low  
cufflinks 0.065     Low  

0 Strain